T. Chad Effler

Oak Ridge National Laboratory — United States

Environmental Science · Physical Sciences

5h-index584citations10works0.02yr avg
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Research Topics

Microbial Community Ecology and Physiology(4), Genomics and Phylogenetic Studies(3), Protein Structure and Dynamics(3), Parallel Computing and Optimization Techniques(3), Advanced Data Storage Technologies(3)

Publications10 total

OpenMDlr: parallel, open-source tools for general protein structure modeling and refinement from pairwise distances
Bioinformatics·2022Open Access
High-Performance Deep Learning Toolbox for Genome-Scale Prediction of Protein Structure and Function
2021· 13 citedOpen Access
Modeling protein structures from predicted contacts with modern molecular dynamics potentials
2021Open Access
Performance Potential of Mixed Data Management Modes for Heterogeneous Memory Systems
2020· 2 cited
Evaluating the effectiveness of program data features for guiding memory management
Proceedings of the International Symposium on Memory Systems·2019· 8 citedOpen Access
On Automated Feedback-Driven Data Placement in Multi-tiered Memory
Lecture notes in computer science·2018· 4 cited
The elemental composition of virus particles: implications for marine biogeochemical cycles
Nature Reviews Microbiology·2014· 402 cited
De-MetaST-BLAST: A Tool for the Validation of Degenerate Primer Sets and Data Mining of Publicly Available Metagenomes
PLoS ONE·2012· 15 citedOpen Access
Comparative Metagenomics of Toxic Freshwater Cyanobacteria Bloom Communities on Two Continents
PLoS ONE·2012· 140 citedOpen Access
The influence of sample biases on estimations of marine microbial diversity
BMC Bioinformatics·2012Open Access

Frequent Co-authors

Alison Buchan(3), Steven W. Wilhelm(3), Ada Sedova(3), Michael R. Jantz(3), Prasad A. Kulkarni(2), Kshitij Doshi(2), Terry Jones(2), Russell B. Davidson(2), Jess Woods(2), Mathialakan Thavappiragasam(2), Jerry M. Parks(2), Luis F. Jover(1), Joshua S. Weitz(1), Morgan M. Steffen(1), Zhou Li(1), Loren Hauser(1), Gregory L. Boyer(1), Christopher A. Gulvik(1), Mu Gao(1), Peik K. Lund-Andersen(1)