Hadi Quesneville

Institut National de la Recherche Agronomique — MA

Agricultural and Biological Sciences · Life Sciences

63h-index29.4kcitations218works0.22yr avg
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Research Topics

Chromosomal and Genetic Variations(80), Genomics and Phylogenetic Studies(55), Plant Disease Resistance and Genetics(37), Wheat and Barley Genetics and Pathology(30), RNA and protein synthesis mechanisms(26)

Publications216 total

RepetDB: a database of reference TE sequences and their information
SPIRE - Sciences Po Institutional REpository·2025
The tiny germline chromosomes of Paramecium aurelia have an exceptionally high recombination rate and are capped by a new class of Helitrons
2025· 1 citedOpen Access
REPET v4.0: A Comprehensive Tool for Transposable Element Analysis
SPIRE - Sciences Po Institutional REpository·2025
Identifying the contribution of transposable elements to cis-regulatory elements in plants
SPIRE - Sciences Po Institutional REpository·2025
REPET V4.0, making life easier for de novo TE annotation
SPIRE - Sciences Po Institutional REpository·2025
TE Detection and Annotation Using Repet V4.0
SPIRE - Sciences Po Institutional REpository·2025Open Access
Recommandations sur les usages du webscraping au sein d'INRAE
SPIRE - Sciences Po Institutional REpository·2024Open Access
panREPET: a reference-free pipeline for detecting shared Transposable Elements from pan-genomes to retrace their dynamics in a species
2024· 1 citedOpen Access
A Benchmark for Transposable Element annotation tools
SPIRE - Sciences Po Institutional REpository·2024
Evolutionary Dynamics of Transposable Elements in Brachypodium distachyon Based on a Pangenomic Approach
SPIRE - Sciences Po Institutional REpository·2024
Characterization of Transposable Elements in Pangenomes
theses.fr (ABES)·2023Open Access
How to use REPET for de novo TE annotation
SPIRE - Sciences Po Institutional REpository·2023
SyntenyViewer: a comparative genomics-driven translational research tool
Database·2023· 1 citedOpen Access
Les éléments transposables, de leur annotation à leur intégration en graphes de connaissance
SPIRE - Sciences Po Institutional REpository·2022
Meeting the Challenges Facing Wheat Production: The Strategic Research Agenda of the Global Wheat Initiative
Agronomy·2022· 76 citedOpen Access
REPET evolutions: faster and easier
SPIRE - Sciences Po Institutional REpository·2022
Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila
Nature Communications·2022· 126 citedOpen Access
Traces of transposable elements in genome dark matter co-opted by flowering gene regulation networks
Peer Community Journal·2022· 11 citedOpen Access
A Genomic Survey of Mayetiola destructor Mobilome Provides New Insights into the Evolutionary History of Transposable Elements in the Cecidomyiid Midges
PLoS ONE·2021· 7 citedOpen Access
Population-scale long-read sequencing uncovers transposable elements contributing to gene expression variation and associated with adaptive signatures in <i>Drosophila melanogaster</i>
2021· 4 citedOpen Access
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Frequent Co-authors

Patrick Wincker(11), Florian Maumus(11), Joëlle Amselem(10), Arnaud Couloux(9), Jean‐Marc Aury(8), Jérôme Salse(7), Valérie Barbe(6), Véronique Jamilloux(6), Corinne Da Silva(6), Florent Murat(6), Jaroslav Doležel(5), Adriana Alberti(5), Michaël Alaux(5), Véronique Anthouard(5), Pedro M. Coutinho(5), Julie Poulain(5), Delphine Steinbach(5), Bernard Henrissat(5), Francis Martin(5), Sébastien Duplessis(5)