Rui Qiao

Shanghai Jiao Tong University — China

Biochemistry, Genetics and Molecular Biology · Life Sciences

8h-index674citations25works1.32yr avg
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Research Topics

vaccines and immunoinformatics approaches(8), Advanced Proteomics Techniques and Applications(4), Immunotherapy and Immune Responses(4), Transportation and Mobility Innovations(4), Genomics and Phylogenetic Studies(3)

Publications25 total

Analysis and research on domestic substitution of transportation reducers for shuttle car in mining
2025
NovoBoard: A Comprehensive Framework for Evaluating the False Discovery Rate and Accuracy of De Novo Peptide Sequencing
Molecular & Cellular Proteomics·2025Open Access
Spatiotemporal Dynamics of Human Ovarian Cortex Transcriptome Following Vitrification and Thawing: Insights into the FOS/AP-1 Pathway
2025Open Access
Game analysis of ride hailing and urban public transportation based on non cooperative game theory
IET conference proceedings.·2025
Study on the interactive relationship between rural roads and agricultural economic development
IET conference proceedings.·2025
Research on Collaborative Scheduling Optimization of Multi-Type Shared Bicycles
2024
NovoBoard: A Comprehensive Framework for Evaluating the False Discovery Rate and Accuracy of De Novo Peptide Sequencing
Molecular & Cellular Proteomics·2024· 9 citedOpen Access
Discovering and Validating Neoantigens by Mass Spectrometry-based Immunopeptidomics and Deep Learning
2022· 3 citedOpen Access
A streamlined platform for analyzing tera-scale DDA and DIA mass spectrometry data enables highly sensitive immunopeptidomics
Nature Communications·2022· 101 citedOpen Access
Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices
Nature Machine Intelligence·2021· 92 cited
Optimization of Free-Floating Bike Sharing Systems: Considerations in Recovery of Damaged Bicycles
CICTP 2020·2020
Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines
Nature Machine Intelligence·2020· 41 cited
Peptide Sequencing with Deep Learning
UWSpace (University of Waterloo)·2020· 1 citedOpen Access
Source data for PointNovo
2020· 1 citedOpen Access
Source data for PointNovo
Zenodo (CERN European Organization for Nuclear Research)·2020Open Access
Simple weakly supervised deep learning pipeline for detecting individual red-attacked trees in VHR remote sensing images
Remote Sensing Letters·2020· 29 cited
Personalized workflow to identify optimal T-cell epitopes for peptide-based vaccines against COVID-19
arXiv (Cornell University)·2020· 11 citedOpen Access
Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines
2019· 8 citedOpen Access
DeepNovoV2: Better de novo peptide sequencing with deep learning
arXiv (Cornell University)·2019· 15 citedOpen Access
Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry
Nature Methods·2018· 361 cited
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Frequent Co-authors

Ngoc Hieu Tran(10), Baozhen Shan(10), Lei Xin(9), Ming Li(9), Ali Ghodsi(5), Xin Chen(4), Shengying Pan(3), Qing Zhang(3), Zeping Mao(2), Wenting Li(2), Chao Xie(2), Yannan Zhou(2), Hongzhi Wu(2), Dong Yang(2), Feng Shi(2), Chuyi Liu(1), Xianglilan Zhang(1), Sahar Rabinoviz(1), Haibo Bian(1), Xianliang He(1)