Joshua A. Mitchell

Open Geospatial Consortium — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

10h-index656citations32works0.02yr avg
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Research Topics

Protein Structure and Dynamics(4), Machine Learning in Materials Science(4), Malaria Research and Control(3), Complement system in diseases(3), Enzyme Structure and Function(3)

Publications32 total

Developing and benchmarking Sage 2.3.0 with the AshGC neural network charge model
2026Open Access
openforcefield/openff-forcefields
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
Leveraging the Collective Wisdom of a Network to Identify Behaviors Linked to Entrepreneurial Mindset
2025
OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentials
The Journal of Physical Chemistry B·2023· 353 citedOpen Access
OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentials
arXiv (Cornell University)·2023· 20 citedOpen Access
Development and benchmarking of an open, self-consistent force field for proteins and small molecules from the open force field initiative
Biophysical Journal·2023· 1 citedOpen Access
Sound Cage
Resonance The Journal of Sound and Culture·2023
Open Force Field BespokeFit: Automating Bespoke Torsion Parametrization at Scale
Journal of Chemical Information and Modeling·2022· 55 citedOpen Access
Mary Pickford’s mugshot: early Hollywood celebrities and San Quentin Prison
Early Popular Visual Culture·2022
Supporting information for: Open Force Field BespokeFit: Automating Bespoke Torsion Parametrization At Scale
Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
Author response for "Computational design and experimental characterisation of a stable human heparanase variant"
2022
Computational design and experimental characterisation of a stable human heparanase variant
RSC Chemical Biology·2022· 12 citedOpen Access
A Rationally and Computationally Designed Fluorescent Biosensor for <scp>d</scp>-Serine
ACS Sensors·2021· 16 cited
A computationally designed fluorescent biosensor for D-serine
2020· 4 citedOpen Access
The Effect of Anatomical Education for First Year Medical Students in Point of Care Ultrasound Training
The FASEB Journal·2019
Structural and evolutionary approaches to the design and optimization of fluorescence-based small molecule biosensors
Current Opinion in Structural Biology·2019· 29 cited
Access for Whom? OER and Disability Services
2018
Monitoring hippocampal glycine with the computationally designed optical sensor GlyFS
Nature Chemical Biology·2018· 70 cited
T-dependent B cell responses to Plasmodium induce antibodies that form a high-avidity multivalent complex with the circumsporozoite protein
PLoS Pathogens·2017· 54 citedOpen Access
Capturing the Dynamics of a Spring-Loaded Protein
Structure·2017· 1 citedOpen Access
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Frequent Co-authors

Colin J. Jackson(11), John D. Chodera(5), Harald Janovjak(5), Christian Henneberger(5), Jason Whitfield(4), Vanessa Vongsouthi(4), Pavan Kumar Behara(4), Joe A. Kaczmarski(4), William Zhang(3), Björn Breithausen(3), Joshua T. Horton(3), Simon Boothroyd(3), Trevor Gokey(3), David Dotson(3), David L. Mobley(3), Daniel J. Cole(3), Camilla R. Fisher(3), Henry J. Sutton(3), Hayley A. McNamara(3), Yeping Cai(3)