Annalisa Marsico

Helmholtz Zentrum München — Germany

Biochemistry, Genetics and Molecular Biology · Life Sciences

15h-index847citations45works3.02yr avg
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Research Topics

RNA and protein synthesis mechanisms(21), RNA Research and Splicing(19), RNA modifications and cancer(18), Cancer-related molecular mechanisms research(10), Machine Learning in Bioinformatics(8)

Publications45 total

Path-based reasoning for biomedical knowledge graphs with BioPathNet
2024· 3 citedOpen Access
Genome-wide measurement of RNA dissociation from chromatin classifies transcripts by their dynamics and reveals rapid dissociation of enhancer lncRNAs
Cell Systems·2023· 5 citedOpen Access
SND1 binds SARS-CoV-2 negative-sense RNA and promotes viral RNA synthesis through NSP9
Cell·2023· 48 citedOpen Access
A systematic benchmark of machine learning methods for protein–RNA interaction prediction
Briefings in Bioinformatics·2023· 23 citedOpen Access
Towards in silico CLIP-seq: predicting protein-RNA interaction via sequence-to-signal learning
Genome biology·2023· 29 citedOpen Access
A Systematic Benchmark of Machine Learning Methods for Protein-RNA Interaction Prediction
2023· 1 citedOpen Access
Towards In-Silico CLIP-seq: Predicting Protein-RNA Interaction via Sequence-to-Signal Learning
2022· 4 citedOpen Access
Transfer learning identifies sequence determinants of regulatory element accessibility
2022· 1 citedOpen Access
Exposure to naphthalene and β-pinene-derived secondary organic aerosol induced divergent changes in transcript levels of BEAS-2B cells
Environment International·2022· 35 citedOpen Access
Summary statistics - Multi-ancestry GWAS of asthma exacerbations
Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
Summary statistics - Multi-ancestry GWAS of asthma exacerbations
Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
Computational Mapping of the Human-SARS-CoV-2 Protein-RNA Interactome
2021· 3 citedOpen Access
Kinetics of <i>Xist</i> -induced gene silencing can be predicted from combinations of epigenetic and genomic features
Genome Research·2019· 53 citedOpen Access
Functional impacts of non-coding RNA processing on enhancer activity and target gene expression
Journal of Molecular Cell Biology·2019· 22 citedOpen Access
Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis
BMC Bioinformatics·2019· 15 citedOpen Access
TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs
Nucleic Acids Research·2019· 61 citedOpen Access
Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features
2019· 5 citedOpen Access
Network-Based Methods and Other Approaches for Predicting lncRNA Functions and Disease Associations
Methods in molecular biology·2019· 8 cited
Graph Convolutional Networks Improve the Prediction of Cancer Driver Genes
Lecture notes in computer science·2019· 30 cited
TriPepSVM - <i>de novo</i> prediction of RNA-binding proteins based on short amino acid motifs
2018· 2 citedOpen Access
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Frequent Co-authors

Marc Horlacher(7), Michael Schroeder(7), Lambert Moyon(6), Dirk Labudde(6), Evgenia Ntini(5), Martin Vingron(5), Stefan Budach(4), Roman Schulte-Sasse(4), K. Tanuj Sapra(4), Anne Tuukkanen(4), Nicolas Goedert(4), Ulf Andersson Ørom(3), Uwe Ohler(3), Yue Hu(3), Kerstin Scheubert(3), Andreas Henschel(3), Christof Winter(3), Marco Salvatore(3), Ole Winther(3), Giulia Cantini(3)