Elmar Pruesse

National Jewish Health — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

19h-index83.4kcitations51works2.42yr avg
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Research Topics

Genomics and Phylogenetic Studies(23), Microbial Community Ecology and Physiology(22), RNA modifications and cancer(14), Respiratory viral infections research(9), Neonatal Respiratory Health Research(5)

Publications51 total

Transcriptomic and functional responses of the cystic fibrosis airway epithelium to CFTR modulator therapy
JCI Insight·2025Open Access
Independent and interactive effects of viral species on early-life lower respiratory tract illness
Journal of Infection·2025Open Access
The Common Cold Is Associated With Protection From SARS-CoV-2 Infections
The Journal of Infectious Diseases·2025· 4 citedOpen Access
Characterization of Airway Cell Composition at Birth and Changes Over Infancy and During Respiratory Illnesses
American Journal of Respiratory and Critical Care Medicine·2025
Unique Airway Immune Responses and Epithelial Pathobiology Underlie Viral Wheezing Illnesses in Young Children
American Journal of Respiratory and Critical Care Medicine·2025
The PRIMERO birth cohort: Design and baseline characteristics
Journal of Allergy and Clinical Immunology Global·2025Open Access
Independent and interactive effects of viral species on risk for lower respiratory tract illnesses in early life
2025Open Access
Type 1 Immune Responses Related to Viral Infection Influence Corticosteroid Response in Asthma
American Journal of Respiratory and Critical Care Medicine·2024· 22 citedOpen Access
Viral Determinants of Childhood Asthma Exacerbation Severity and Treatment Response
The Journal of Allergy and Clinical Immunology In Practice·2024· 5 citedOpen Access
Transcriptional Dysregulation of Airway Epithelial and Immune Cells in Deployment-Related Lung Disease
2024
Puerto Rican Infant Metagenomic and Epidemiologic Study of Respiratory Outcomes (PRIMERO): Design and Baseline Characteristics for Puerto Rico's Inaugural Asthma Birth Cohort Study
2024
Viral Determinants of Early-Life Lower Respiratory Tract Illnesses: Results From the PRIMERO Birth Cohort Study
2024
Rhinovirus (HRV) Infection Drives Severe Wheezing Episodes in Toddlers: Viral Metagenomic Analysis in the WINDOWS Study
2024· 1 cited
The Puerto Rican Infant Metagenomic and Epidemiologic Study of Respiratory Outcomes (PRIMERO): Design and Baseline Characteristics for a Birth Cohort Study of Early-life Viral Respiratory Illnesses and Airway Dysfunction in Puerto Rican Children
2024· 2 citedOpen Access
Asthma severity and corticosteroid response depend on variable type 1 and type 2 inflammation in the airway
2023· 3 citedOpen Access
Heterogeneity in Clinically and Molecularly Defined Airway Type 2 Inflammation Among Children with Exacerbation-Prone Asthma
2022
phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes
mSystems·2020· 334 citedOpen Access
Type 2 and interferon inflammation regulate SARS-CoV-2 entry factor expression in the airway epithelium
Nature Communications·2020· 190 citedOpen Access
Supplementary data (simulated metagenome set 3) to accompany "phyloFlash – Rapid SSU rRNA profiling and targeted assembly from metagenomes"
Zenodo (CERN European Organization for Nuclear Research)·2020Open Access
Supplementary data (simulated metagenome set 3) to accompany "phyloFlash – Rapid SSU rRNA profiling and targeted assembly from metagenomes"
2020Open Access
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Frequent Co-authors

Harald R. Gruber‐Vodicka(16), Brandon Kwee Boon Seah(16), Jamie L. Everman(16), Nathan D. Jackson(15), Max A. Seibold(14), Camille M. Moore(13), E.A. Secor(11), Frank Oliver Glöckner(10), Satria P. Sajuthi(9), Christian Quast(8), Jörg Peplies(8), Celeste Eng(8), Ana Fairbanks-Mahnke(8), Pelin Yilmaz(7), Cydney Rios(7), Vivian Medina(7), Manimozhiyan Arumugam(6), Colin Brislawn(6), Scott T. Kelley(6), Dan Knights(6)