Markus J. Ankenbrand

University of Würzburg — Germany

Biochemistry, Genetics and Molecular Biology · Life Sciences

24h-index2.6kcitations204works10.82yr avg
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Research Topics

Genomics and Phylogenetic Studies(29), Radiomics and Machine Learning in Medical Imaging(22), Plant and animal studies(14), Cardiac Imaging and Diagnostics(12), Microbial Community Ecology and Physiology(12)

Publications204 total

Visualizing the transcription and replication of influenza A viral RNAs in cells by multiple direct RNA padlock probing and <i>in situ</i> sequencing (mudRapp-seq)
Nucleic Acids Research·2025· 1 citedOpen Access
Detection of Local Prostate Cancer Recurrence from PET/CT Scans Using Deep Learning
Cancers·2025Open Access
Stability of Dynamic Radiomics Features in Cardiac MRI
2025Open Access
Visualizing the transcription and replication of influenza A viral RNAs in cells by multiple direct RNA padlock probing and <i>in-situ</i> sequencing (mudRapp-seq)
2025Open Access
Detection of Local Prostate Cancer Recurrence from PET/CT Scans Using Deep Learning
Preprints.org·2025Open Access
gggenomes: effective and versatile visualizations for comparative genomics
arXiv (Cornell University)·2024· 24 citedOpen Access
Review for "mtGrasp: Streamlined reference‐grade mitochondrial genome assembly and standardization to enhance metazoan mitogenome resources"
2024
Multiple direct RNA padlock probing and in-situ sequencing (mudRapp-seq)
2024
gggenomes: A Grammar of Graphics for Comparative Genomics
2024· 83 citedOpen Access
Cardiac function in a large animal model of myocardial infarction at 7 T: deep learning based automatic segmentation increases reproducibility
Scientific Reports·2024· 2 citedOpen Access
Review for "A &lt;scp&gt;FAIR&lt;/scp&gt; and modular image‐based workflow for knowledge discovery in the emerging field of imageomics"
2024
Semi-automated sequence curation for reliable reference datasets in ITS2 vascular plant DNA (meta-)barcoding
Scientific Data·2024· 20 citedOpen Access
Opportunistic Bacteria of Grapevine Crown Galls Are Equipped with the Genomic Repertoire for Opine Utilization
Genome Biology and Evolution·2023· 4 citedOpen Access
Recognition and reconstruction of cell differentiation patterns with deep learning
PLoS Computational Biology·2023· 7 citedOpen Access
Review for "A &lt;scp&gt;FAIR&lt;/scp&gt; and modular image‐based workflow for knowledge discovery in the emerging field of imageomics"
2023
Transfer Learning in Ultrahigh Field (7T) Cardiac MRI – Automatic Left Ventricular Segmentation in a Porcine Animal Model
Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition·2023
Cardiac Cine MRI images and labels of Sus scrofa at 7T
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Cardiac Cine MRI images and labels of Sus scrofa at 7T
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Opportunistic bacteria of grapevine crown galls are equipped with the genomic repertoire for opine utilization
2023· 1 citedOpen Access
MyoPS: A benchmark of myocardial pathology segmentation combining three-sequence cardiac magnetic resonance images
Medical Image Analysis·2023· 51 cited
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Frequent Co-authors

Alexander Keller(18), Frank Förster(10), Thomas Hackl(9), Wolfgang Schreiber(9), David Lohr(7), Ingolf Steffan‐Dewenter(6), Jörg Schultz(6), Sonja C.Y. Hohlfeld(6), Niklas Terhoeven(5), Wiebke Sickel(4), Gudrun Grimmer(4), Rachael V. Gallagher(4), Daniel S. Falster(4), Brian Maitner(4), Roberto Salguero‐Gómez(4), William D. Pearse(4), Florian D. Schneider(4), Jens Kattge(4), Jorrit H. Poelen(4), Joshua S. Madin(4)