Matthew R. Olm

University of Colorado Boulder — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

29h-index7.9kcitations130works1.42yr avg
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Research Topics

Gut microbiota and health(66), Microbial Community Ecology and Physiology(41), Probiotics and Fermented Foods(31), Genomics and Phylogenetic Studies(26), Infant Nutrition and Health(26)

Publications130 total

DNA extraction and virome processing methods strongly influence recovered human gut viral community characteristics
bioRxiv (Cold Spring Harbor Laboratory)·2025Open Access
Mapping the oral microbiome opens links to periodontitis
Cell Host & Microbe·2025
Integration of Donor Microbiota Following FMT Predicts Anti–PD-1 Response in Melanoma
2025Open Access
MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics
mSystems·2025Open Access
Teaching right from wrong: Developing a model of early immune education
PLoS Biology·2025Open Access
Prehistoric Global Migration of Vanishing Gut Microbes With Humans
2025Open Access
Continent-wide assessment of the strain-level diversity of <i>Bradyrhizobium</i> , a dominant soil bacterial genus
2025Open Access
Maternal balanced energy-protein supplementation reshapes the maternal gut microbiome and enhances carbohydrate metabolism in infants: a randomized controlled trial
Nature Communications·2025· 4 citedOpen Access
Metagenomic immunoglobulin sequencing reveals IgA coating of microbial strains in the healthy human gut
Nature Microbiology·2025· 9 citedOpen Access
High strain-level diversity of <i>Bradyrhizobium</i> across Australian soils
The ISME Journal·2025· 1 citedOpen Access
1257 Linking fecal microbiota transplant (FMT) to anti-PD-1 response in melanoma using strain-resolved metagenomics
Regular and Young Investigator Award Abstracts·2024Open Access
Hospitalization throws the preterm gut microbiome off-key
Cell Host & Microbe·2024
Data supporting publication: MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics
Zenodo (CERN European Organization for Nuclear Research)·2024Open Access
Maternal Fortified Balanced Energy-Protein Supplementation Increases Diversity of the Maternal Gut Microbiome and the Capacity of Carbohydrate Uptake in Infant Gut
Current Developments in Nutrition·2024Open Access
MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics
2024· 6 citedOpen Access
Milk to mucus: How B. fragilis colonizes the gut
Cell Host & Microbe·2024· 3 cited
Metabolic diversity in commensal protists regulates intestinal immunity and trans-kingdom competition
Cell·2023· 33 citedOpen Access
Data supporting publication "Metagenomic Immunoglobulin Sequencing (MIG-Seq) Exposes Patterns of IgA Antibody Binding in the Healthy Human Gut Microbiome"
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Effects of Maternal Fortified Balanced Energy-Protein Supplementation on the Mother-Infant Gut Microbiome: A Sub-Study of the MISAME-III Randomized Controlled Trial
2023· 1 citedOpen Access
Data supporting publication "Metagenomic Immunoglobulin Sequencing (MIG-Seq) Exposes Patterns of IgA Antibody Binding in the Healthy Human Gut Microbiome"
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
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Frequent Co-authors

Jillian F. Banfield(37), Michael J. Morowitz(20), Alexander Crits‐Christoph(16), Brian Firek(16), Robyn Baker(12), Spencer Diamond(10), Brandon Brooks(9), Brian C. Thomas(9), Keith Bouma‐Gregson(8), Justin L. Sonnenburg(8), Paula B. Matheus Carnevali(7), Yue Clare Lou(7), Christopher T. Brown(6), Adi Lavy(6), Karthik Anantharaman(6), Dylan Dahan(6), Matthew M. Carter(6), Erica D. Sonnenburg(6), Rose S. Kantor(5), Basem Al-Shayeb(4)