Adam K. Sieradzan

University of Gdańsk — Poland

Biochemistry, Genetics and Molecular Biology · Life Sciences

24h-index1.9kcitations111works2.72yr avg
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Research Topics

Protein Structure and Dynamics(69), Enzyme Structure and Function(43), RNA and protein synthesis mechanisms(20), DNA and Nucleic Acid Chemistry(10), Bacteriophages and microbial interactions(10)

Publications111 total

Extension of UNRES coarse grained model of polypeptide chains to membrane proteins
Elsevier eBooks·2026
Comparison of protein-glycosaminoglycan interactions in ff14sb/GLYCAM06j and CHARMM36m force fields
2025· 1 citedOpen Access
CD160-Derived Peptide as a Bidirectional Inhibitor Toward Immune Checkpoints BTLA/HVEM and HVEM/LIGHT
Journal of Medicinal Chemistry·2025Open Access
Evaluation of LIGHT-derived peptides to disrupt the HVEM/LIGHT immune checkpoint
Scientific Reports·2025· 1 citedOpen Access
HVEM-derived peptides as inhibitors of HVEM/LIGHT complex formation
Bioorganic Chemistry·2025
In Vitro Bioactivity Evaluation of <scp>IL</scp>‐4 and <scp>SDF</scp>‐1 Mimicking Peptides Engineered to Enhance Skeletal Muscle Reconstruction
Journal of Biomedical Materials Research Part A·2025· 2 citedOpen Access
UNRES web server: Extensions to nucleic acids, prediction of peptide aggregation, and new types of restrained calculations
Journal of Molecular Biology·2025· 3 citedOpen Access
Implementation of the UNRES/SUGRES-1P Coarse-Grained Model of Heparin for Simulating Protein/Heparin Interactions
Journal of Chemical Theory and Computation·2024· 2 cited
Assessment of Four Theoretical Approaches to Predict Protein Flexibility in the Crystal Phase and Solution
Journal of Chemical Theory and Computation·2024· 3 citedOpen Access
Multilayered Computational Framework for Designing Peptide Inhibitors of HVEM-LIGHT Interaction
The Journal of Physical Chemistry B·2024· 8 citedOpen Access
Integrating Explicit and Implicit Fullerene Models into UNRES Force Field for Protein Interaction Studies
Molecules·2024· 1 citedOpen Access
Peptide-based inhibitors targeting the PD-1/PD-L1 axis: potential immunotherapeutics for cancer
Translational Oncology·2024· 10 citedOpen Access
Multi-GPU UNRES for scalable coarse-grained simulations of very large protein systems
Computer Physics Communications·2024· 9 citedOpen Access
Multi-GPU-powered UNRES package for physics-based coarse-grained simulations of structure, dynamics, and thermodynamics of protein systems at biological size- and timescales
Biophysical Journal·2024Open Access
Unres Web Server: Extension to Include Nucleic Acids, Bioinformatics-Data-Assisted and Time-Averaged Nmr Restraints, and Prediction of Peptide Aggregation/Solubility
SSRN Electronic Journal·2024Open Access
Impact of <scp>AlphaFold</scp> on structure prediction of protein complexes: The <scp>CASP15‐CAPRI</scp> experiment
Proteins Structure Function and Bioinformatics·2023· 79 citedOpen Access
Toward Consistent Physics-Based Modeling of Local Backbone Structures and Chirality Change of Proteins in Coarse-Grained Approaches
The Journal of Physical Chemistry Letters·2023· 5 citedOpen Access
Computational Design of a Highly-Specific HVEM-Based Inhibitor of LIGHT Protein
2023Open Access
Pragmatic Coarse-Graining of Proteins: Models and Applications
Journal of Chemical Theory and Computation·2023· 73 citedOpen Access
Energy landscapes for proteins described by the UNRES coarse-grained potential
Biophysical Chemistry·2023· 3 citedOpen Access
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Frequent Co-authors

Adam Liwo(32), Cezary Czaplewski(21), Paweł Krupa(15), Harold A. Scheraga(14), Agnieszka Karczyńska(12), Rafał Ślusarz(11), Artur Giełdoń(11), Agnieszka G. Lipska(11), Emilia A. Lubecka(10), Magdalena A. Mozolewska(9), Sergey A. Samsonov(8), Karolina Zięba(7), Magdalena J. Ślusarz(7), Sylwia Rodziewicz‐Motowidło(7), Yi He(6), Stanisław Ołdziej(6), Marta Spodzieja(6), Mariusz Makowski(5), Tomasz Wirecki(5), Jianlin Cheng(5)