Mariana Levi

Northeastern University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

7h-index450citations23works0.02yr avg
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Research Topics

RNA and protein synthesis mechanisms(15), Protein Structure and Dynamics(8), RNA modifications and cancer(5), Enzyme Structure and Function(4), DNA and Nucleic Acid Chemistry(2)

Publications23 total

Even Mild COVID Can Increase the Risk of Heart Problems
Scientific American·2022
Diffuse Ions Coordinate Dynamics in a Ribonucleoprotein Assembly
Journal of the American Chemical Society·2022· 18 cited
Diffuse ions coordinate dynamics in a ribonucleoprotein assembly
2021· 4 citedOpen Access
Modeling of sustained spontaneous network oscillations of a sexually dimorphic brainstem nucleus: the role of potassium equilibrium potential
Journal of Computational Neuroscience·2021· 7 cited
Why COVID Vaccines Are Likely Safe for Pregnant People
Scientific American·2021
A steric gate controls P/E hybrid-state formation of tRNA on the ribosome
Nature Communications·2020· 21 citedOpen Access
Precisely Quantifying the Energetics of the Ribosome
Biophysical Journal·2020· 1 citedOpen Access
Studying ribosome dynamics with simplified models
Methods·2019· 27 cited
Quantifying Collective Dynamics in the Ribosome
Bulletin of the American Physical Society·2019
Dissecting the Energetics of Subunit Rotation in the Ribosome
The Journal of Physical Chemistry B·2019· 18 cited
Study of Ion Effects in Group II Introns
Biophysical Journal·2019Open Access
Dissecting the energetics of subunit rotation in the ribosome
2019Open Access
Using SMOG 2 to Simulate Complex Biomolecular Assemblies
Methods in molecular biology·2019· 9 cited
Using SMOG 2 to simulate complex biomolecular assemblies
2018· 3 citedOpen Access
Quantifying the transition state ensembles of biomolecular function
2018Open Access
Quantifying the Relationship between Single-Molecule Probes and Subunit Rotation in the Ribosome
Biophysical Journal·2017· 15 citedOpen Access
Large structure-based simulations are highly scalable.
Figshare·2016Open Access
Description of the SMOG 2 templates included in the distribution.
Figshare·2016Open Access
Correlated fluctuations are observed in all-atom simulations of the HIV-1 capsid.
Figshare·2016Open Access
Protein folding simulations with the default C<sub><i>α</i></sub> and all-atom models of the 64 residue chymotrypsin inhibitor 2 (PDB code: 1YPA).
Figshare·2016Open Access
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Frequent Co-authors

Paul C. Whitford(14), Mohit Raghunathan(6), Ailun Wang(6), Udayan Mohanty(6), Jeffrey K. Noel(5), Hayes Ryan L.(5), Onuchic José N.(5), Whitford Paul C.(5), K. Noel Jeffrey(4), Heiko Lammert(3), Liah Dukaye(3), Huan Yang(3), Lammert Heiko(3), Kelsey N. Walak(2), Kien Nguyen(2), Prasad Bandarkar(2), Ryan L. Hayes(1), José N. Onuchic(1), Daniel Hartman(1), Dávid Lehotzky(1)