Cécile Lepère

Centre National de la Recherche Scientifique — France

Environmental Science · Physical Sciences

24h-index1.9kcitations51works3.72yr avg
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Research Topics

Microbial Community Ecology and Physiology(33), Protist diversity and phylogeny(33), Environmental DNA in Biodiversity Studies(24), Marine and coastal ecosystems(8), Parasitic Infections and Diagnostics(6)

Publications51 total

Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Microbiome·2025Open Access
ParAquaSeq, a Database of Ecologically Annotated rRNA Sequences Covering Zoosporic Parasites Infecting Aquatic Primary Producers in Natural and Industrial Systems
Molecular Ecology Resources·2025· 4 citedOpen Access
Metatranscriptomes-based sequence similarity networks uncover genetic signatures within parasitic freshwater microbial eukaryotes
Microbiome·2025· 4 citedOpen Access
A comprehensive pan-European exploration of fungal plastisphere dynamics along river-to-sea continuums
SSRN Electronic Journal·2025Open Access
A pan‐genomic approach reveals novel <i>Sulfurimonas</i> clade in the ferruginous meromictic Lake Pavin
Molecular Ecology Resources·2024· 4 citedOpen Access
Global freshwater distribution of <i>Telonemia</i> protists
The ISME Journal·2024· 10 citedOpen Access
Functional diversity of microbial eukaryotes in a meromictic lake: Coupling between metatranscriptomic and a trait‐based approach
Environmental Microbiology·2023· 29 citedOpen Access
High diversity of microsporidian parasites and new planktonic hosts in freshwater and marine ecosystems
Limnology and Oceanography·2023· 4 citedOpen Access
Perkinsea: what the hell are they doing in freshwater lake ecosystem
SPIRE - Sciences Po Institutional REpository·2022
<scp>FreshOmics</scp>: A manually curated and standardized –omics database for investigating freshwater microbiomes
Molecular Ecology Resources·2022· 3 citedOpen Access
Photosynthetic microorganisms effectively contribute to bryophyte CO2 fixation in boreal and tropical regions
ISME Communications·2022· 25 citedOpen Access
Single Cell Analysis Reveals a New Microsporidia-Host Association in a Freshwater Lake
Microbial Ecology·2022· 1 citedOpen Access
Métabarcoding et étude de traits, vers une description de la diversité taxonomique et fonctionnelle des eucaryotes unicellulaires dans le lac Pavin
SPIRE - Sciences Po Institutional REpository·2022Open Access
Temporal variations of Microsporidia diversity and discovery of new host–parasite interactions in a lake ecosystem
Environmental Microbiology·2022· 21 citedOpen Access
Microsporidies en milieu lacustre : étude temporelle de leur diversité et découverte de nouveaux hôtes
SPIRE - Sciences Po Institutional REpository·2021Open Access
A phylogenetic framework to investigate the microsporidian communities through metabarcoding and its application to lake ecosystems
Environmental Microbiology·2021· 34 citedOpen Access
Freshwater Perkinsea: diversity, ecology and genomic information
Journal of Plankton Research·2019· 42 cited
Peer Review #2 of "Diversity, spatial distribution and activity of fungi in freshwater ecosystems (v0.1)"
2019Open Access
Diversity, spatial distribution and activity of fungi in freshwater ecosystems
PeerJ·2019· 59 citedOpen Access
Temporal and spatial variations in the composition of freshwater photosynthetic picoeukaryotes revealed by MiSeq sequencing from flow cytometry sorted samples
Environmental Microbiology·2017· 29 cited
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Frequent Co-authors

Didier Debroas(28), Isabelle Domaizon(18), Gisèle Bronner(8), Arthur Monjot(8), Ludwig Jardillier(7), David J. Scanlan(7), Marina Chauvet(7), Anne Moné(7), Agnès Vellet(6), Daniel Vaulot(4), Mylène Hugoni(4), Ivan Wawrzyniak(4), Corinne Biderre‐Petit(4), Stéphan Jacquet(4), Jean François Humbert(3), Delphine Boucher(3), Jean‐François Mangot(3), Aurore Dubuffet(3), Damien Courtine(3), Corinne Cruaud(3)