Jakob Zopfi

University of Basel — Switzerland

Environmental Science · Physical Sciences

42h-index5.7kcitations145works0.92yr avg
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Research Topics

Methane Hydrates and Related Phenomena(39), Microbial Community Ecology and Physiology(39), Marine and coastal ecosystems(36), Atmospheric and Environmental Gas Dynamics(27), Wastewater Treatment and Nitrogen Removal(22)

Publications145 total

Redox gradients define the ecological niche of ciliates with denitrifying endosymbionts in anoxic lake waters
The ISME Journal·2026Open Access
Depth-resolved carbon dioxide and methane concentrations in 522 lakes, ponds, and reservoirs worldwide
Scientific Data·2026Open Access
Porewater nitrate isotope dynamics in selected benthic habitats: Modulation by sediment reactivity and process coupling via nitrite
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
Porewater nitrate isotope dynamics in selected benthic habitats: Modulation by sediment reactivity and process coupling via nitrite
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
Nitrous oxide cycling and isotopic overprinting in lake basins with contrasting mixing regimes
2026Open Access
A comprehensive porewater isotope model for simulating benthic nitrogen cycling: description, application to lake sediments, and uncertainty analysis
Biogeosciences·2026Open Access
Microbial nitrogen removal and recycling in the redox transition zone of a meromictic lake and its coupling to sulfur cycling
Limnology and Oceanography·2026Open Access
Isotopic constraints on active nitrification in a eutrophic artificially oxygenated lake: Implications for nitrate regeneration and nitrous oxide production
Limnology and Oceanography·2026Open Access
Comment on egusphere-2025-5033
2025Open Access
Oxygen Isotopic Fractionation of O <sub>2</sub> Consumption by Methane and Ammonia Monooxygenases
ACS Environmental Au·2025Open Access
Methanogenesis by CO <sub>2</sub> reduction dominates lake sediments with different organic matter compositions
Biogeosciences·2025· 2 citedOpen Access
A comprehensive porewater isotope model for simulating benthic nitrogen cycling: Description, application to lake sediments, and uncertainty analysis
2025· 1 citedOpen Access
Supplementary material to "A comprehensive porewater isotope model for simulating benthic nitrogen cycling: Description, application to lake sediments, and uncertainty analysis"
2025Open Access
Non-canonical reductive nitrous oxide production pathways in a seasonally stratified lake basin
2025Open Access
Dataset for: Non-canonical reductive nitrous oxide production pathways in a seasonally stratified lake basin
Zenodo (CERN European Organization for Nuclear Research)·2025Open Access
Dataset for: Non-canonical reductive nitrous oxide production pathways in a seasonally stratified lake basin
Zenodo (CERN European Organization for Nuclear Research)·2025Open Access
Methanotrophic Flexibility of ‘ <i>Ca</i> . Methanoperedens’ and Its Interactions With Sulphate‐Reducing Bacteria in the Sediment of Meromictic Lake Cadagno
Environmental Microbiology·2025Open Access
Nitrogen and oxygen isotope effects during enzymatic nitrate reduction <i>in vitro</i> and by natural lake water consortia
2025· 1 citedOpen Access
Supplementary material to "Methanogenesis by CO <sub>2</sub> reduction dominates lake sediments with different organic matter compositions"
2025Open Access
Methanogenesis by CO <sub>2</sub> reduction dominates lake sediments with different organic matter compositions
2025Open Access
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Frequent Co-authors

Moritz F. Lehmann(16), Helge Niemann(11), Nico Goldscheider(8), Carsten J. Schubert(6), Bo Barker Jørgensen(5), Michiel Pronk(5), Jan Blees(5), John Poté(4), Mauro Veronesi(4), Andrea G. Bravo(4), Lea Steinle(4), Michel Aragno(3), Laurence Haller(3), Walter Wildi(3), Jaap S. Sinninghe Damsté(3), Christine B. Wenk(3), Stefan Bertilsson(3), David Amouroux(3), Tina Treude(3), Sylvia Humbert(2)