Erika McCarthy

Stevens Institute of Technology — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

7h-index162citations14works9.02yr avg
OpenAlex↗ORCID↗Google Scholar↗Lab page↗

Accepting Students?

No reports yet. Know if this professor is taking students?

Research Topics

RNA and protein synthesis mechanisms(5), vaccines and immunoinformatics approaches(5), Protein Structure and Dynamics(4), Machine Learning in Materials Science(3), SARS-CoV-2 and COVID-19 Research(2)

Publications14 total

Oxidative and Hydrolytic HNO Formation from a Clinical Drug Hydroxyurea Catalyzed by Horseradish Peroxidase: Basic Mechanism, Active Site Effect, and Implications for Drug Design
JACS Au·2025· 2 citedOpen Access
FE-ToolKit: A Versatile Software Suite for Analysis of High-Dimensional Free Energy Surfaces and Alchemical Free Energy Networks
Journal of Chemical Information and Modeling·2025· 3 citedOpen Access
The Role of General Acid Catalysis in the Mechanism of an Alkyl Transferase Ribozyme
ACS Catalysis·2024· 7 citedOpen Access
Software Infrastructure for Next-Generation QM/MM−ΔMLP Force Fields
The Journal of Physical Chemistry B·2024· 22 citedOpen Access
Surface-Accelerated String Method for Locating Minimum Free Energy Paths
Journal of Chemical Theory and Computation·2024· 11 citedOpen Access
Catalytic mechanism and pH dependence of a methyltransferase ribozyme (MTR1) from computational enzymology
Nucleic Acids Research·2023· 13 citedOpen Access
Dissociative Transition State in Hepatitis Delta Virus Ribozyme Catalysis
Journal of the American Chemical Society·2023· 9 citedOpen Access
RNA Electrostatics: How Ribozymes Engineer Active Sites to Enable Catalysis
The Journal of Physical Chemistry B·2022· 18 citedOpen Access
Evolution of the <scp>SARS‐CoV</scp>‐2 proteome in three dimensions (3D) during the first 6 months of the <scp>COVID</scp>‐19 pandemic
Proteins Structure Function and Bioinformatics·2021· 48 citedOpen Access
Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic
2020· 28 citedOpen Access
Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic -- Supplementary Tables and Models
Zenodo (CERN European Organization for Nuclear Research)·2020· 1 citedOpen Access
Early 3D Evolution of the SARS-CoV-2 proteome -- Supplementary Tables and Models
Zenodo (CERN European Organization for Nuclear Research)·2020Open Access
Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic -- Supplementary Tables and Models
Zenodo (CERN European Organization for Nuclear Research)·2020Open Access
Early 3D Evolution of the SARS-CoV-2 proteome -- Supplementary Tables and Models
Zenodo (CERN European Organization for Nuclear Research)·2020Open Access

Frequent Co-authors

Şölen Ekesan(7), Darrin M. York(7), Joseph H. Lubin(6), Christine Zardecki(6), Elliott M. Dolan(6), Changpeng Lu(6), Zhuofan Shen(6), Shuchismita Dutta(6), John Westbrook(6), Brian P. Hudson(6), David S. Goodsell(6), Jonathan K. Williams(6), Maria Voigt(6), Vidur Sarma(6), Lingjun Xie(6), Thejasvi Venkatachalam(6), Steven E. Arnold(6), Luz Helena Alfaro Alvarado(6), Kevin Catalfano(6), Aaliyah Khan(6)