Donald Geman

Johns Hopkins University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

41h-index31.5kcitations165works0.82yr avg
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Research Topics

Gene expression and cancer classification(32), Image Retrieval and Classification Techniques(27), Advanced Image and Video Retrieval Techniques(22), Bioinformatics and Genomic Networks(17), Molecular Biology Techniques and Applications(16)

Publications165 total

Mapping spatial gradients in spatial transcriptomics data with score matching
2025· 1 citedOpen Access
Label-free selection of marker genes in single-cell and spatial transcriptomics with geneCover
Genome Research·2025· 2 cited
CellCover Defines Marker Gene Panels Capturing Developmental Progression in Neocortical Neural Stem Cell Identity
2025· 1 citedOpen Access
CellCover Defines Marker Gene Panels Capturing Developmental Progression in Neocortical Neural Stem Cell Identity
2025Open Access
GeneCover: A Combinatorial Approach for Label-Free Marker Gene Selection
Lecture notes in computer science·2025· 1 cited
GeneCover: A Combinatorial Approach for Label-free Marker Gene Selection
2024Open Access
CellCover Defines Marker Gene Panels Capturing Developmental Progression in Neocortical Neural Stem Cell Identity
2023· 2 citedOpen Access
Variational Information Pursuit for Interpretable Predictions
arXiv (Cornell University)·2023Open Access
Longitudinal changes in brain metabolites in healthy controls and patients with first episode psychosis: a 7-Tesla MRS study
Molecular Psychiatry·2023· 36 citedOpen Access
Using biological constraints to improve prediction in precision oncology
iScience·2023· 7 citedOpen Access
Interpretable by Design: Learning Predictors by Composing Interpretable Queries
IEEE Transactions on Pattern Analysis and Machine Intelligence·2022· 1 citedOpen Access
Human olfactory neuronal cells through nasal biopsy: molecular characterization and utility in brain science
2022· 1 citedOpen Access
Abstract 173: Efficient representations of tumor diversity with paired DNA-RNA aberrations
Cancer Research·2021
Efficient representations of tumor diversity with paired DNA-RNA aberrations
PLoS Computational Biology·2021· 3 citedOpen Access
Using Biological Constraints to Improve Prediction in Precision Oncology
2021· 2 citedOpen Access
Quantifying Task Complexity Through Generalized Information Measures
2021· 10 cited
An R package for divergence analysis of omics data
PLoS ONE·2021· 2 citedOpen Access
Attribute Prototype Learning for Interactive Face Retrieval
IEEE Transactions on Information Forensics and Security·2021· 7 cited
Identifying Personalized Metabolic Signatures in Breast Cancer
Metabolites·2020· 14 citedOpen Access
Identifying personalized metabolic signatures in breast cancer
Preprints.org·2020· 6 citedOpen Access
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Frequent Co-authors

Stuart Geman(9), Raimond L. Winslow(6), Yali Amit(5), Daniel Q. Naiman(4), Aik Choon Tan(3), Laurent Younès(3), Joseph Horowitz(3), François Fleuret(3), Nathan D. Price(3), Bahman Afsari(3), Luigi Marchionni(3), Nozha Boujemaa(3), Jeffrey T. Leek(2), Christine Graffigne(2), Lei Xu(2), Haluk Derin(2), R. Cristi(2), James A. Eddy(2), Lei Xu(2), Leroy Hood(2)