Benjamin Parks

Stanford University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

8h-index1.1kcitations12works13.52yr avg
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Research Topics

Single-cell and spatial transcriptomics(5), Immune Cell Function and Interaction(3), T-cell and B-cell Immunology(2), COVID-19 Clinical Research Studies(2), Genomics and Chromatin Dynamics(2)

Publications12 total

Dissecting regulatory syntax in human development with scalable multiomics and deep learning
2025· 7 citedOpen Access
Scalable high-performance single cell data analysis with BPCells
2025· 8 cited
Single-molecule states link transcription factor binding to gene expression
Nature·2024· 26 citedOpen Access
Publisher Correction: PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape
Nature Immunology·2024Open Access
PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape
Nature Immunology·2024· 23 citedOpen Access
Single-molecule chromatin configurations link transcription factor binding to expression in human cells
2024· 17 citedOpen Access
NEAT-seq: simultaneous profiling of intra-nuclear proteins, chromatin accessibility and gene expression in single cells
Nature Methods·2022· 130 citedOpen Access
NEAT-seq: Simultaneous profiling of intra-nuclear proteins, chromatin accessibility, and gene expression in single cells
2021· 23 cited
Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19
The Journal of Experimental Medicine·2021· 220 citedOpen Access
Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19
2020· 53 citedOpen Access
Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia
Nature Biotechnology·2019· 541 citedOpen Access
A single cell framework for multi-omic analysis of disease identifies malignant regulatory signatures in mixed phenotype acute leukemia
2019· 2 citedOpen Access

Frequent Co-authors

William J. Greenleaf(12), Sandy Klemm(4), Arwa S. Kathiria(4), Aaron J. Wilk(3), Ruoxi Pi(3), Giovanny J. Martínez-Colón(3), Thanmayi Ranganath(3), Nancy Q. Zhao(3), Euan A. Ashley(3), Catherine A. Blish(3), Andra L. Blomkalns(3), Kari C. Nadeau(3), Ruth O’Hara(3), Angela J. Rogers(3), Samuel Yang(3), Georgi K. Marinov(3), Jeffrey M. Granja(2), Lisa McGinnis(2), Anja Mezger(2), Eric J. Gars(2)