Ramana V. Davuluri

Stony Brook University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

62h-index14.7kcitations232works4.82yr avg
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Research Topics

RNA modifications and cancer(70), MicroRNA in disease regulation(42), Cancer-related molecular mechanisms research(42), Epigenetics and DNA Methylation(41), RNA Research and Splicing(30)

Publications230 total

DeepVRegulome: DNABERT-based deep-learning framework for predicting the functional impact of short genomic variants on the human regulome
arXiv (Cornell University)·2025Open Access
TSProm: Deciphering the Genomic Context of Tissue Specificity
2025Open Access
DNABERT-S: pioneering species differentiation with species-aware DNA embeddings
Bioinformatics·2025· 12 citedOpen Access
Genomic Language Model for Predicting Enhancers and Their Allele-Specific Activity in the Human Genome
2025Open Access
Immunoglobulin superfamily 3 (Igsf3) function is dispensable for brain development
Scientific Reports·2025· 1 citedOpen Access
Designing a time-dependent therapeutic strategy using CDK4/6 inhibitors in an intracranial ATRT model
Neuro-Oncology·2024· 1 citedOpen Access
Biased signaling by mutant EGFR underlies dependence on PKCα in lung adenocarcinoma
Cell Reports·2024· 2 citedOpen Access
A community effort to optimize sequence-based deep learning models of gene regulation
Nature Biotechnology·2024· 25 citedOpen Access
Onco-fetal protein Nogo-A restricts human and mouse glioma vascularization and growth via VEGF-Notch-hippo-metabolic signaling
2024· 1 cited
TransTEx: novel tissue-specificity scoring method for grouping human transcriptome into different expression groups
Bioinformatics·2024· 5 citedOpen Access
MODL-02. ESTABLISHING THE TIME-DEPENDENCE OF CDK4/6 INHIBITOR EFFICACY IN PEDIATRIC BRAIN TUMORS AND FEASIBILITY OF METRONOMIC INTRATHECAL DELIVERY IN A PRECLINICAL MODEL
Neuro-Oncology·2024Open Access
DNABERT-S: Pioneering Species Differentiation with Species-Aware DNA Embeddings
PubMed·2024· 10 citedOpen Access
Epithelial–mesenchymal transition: an organizing principle of mammalian regeneration
Frontiers in Cell and Developmental Biology·2023· 4 citedOpen Access
Integrated Multi-Omic Analysis Reveals Immunosuppressive Phenotype Associated with Poor Outcomes in High-Grade Serous Ovarian Cancer
Cancers·2023· 8 citedOpen Access
DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome
arXiv (Cornell University)·2023· 149 citedOpen Access
Epithelial-Mesenchymal Transition: An Organizing Principle of Mammalian Regeneration
2023· 1 citedOpen Access
Rapid, High-Throughput Single-Cell Multiplex In Situ Tagging (MIST) Analysis of Immunological Disease with Machine Learning
Analytical Chemistry·2023· 1 citedOpen Access
Supplementary Tables 1 and 2, Figures 1-9 from Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma
2023Open Access
Supplementary Figure 1 from MNK Inhibition Disrupts Mesenchymal Glioma Stem Cells and Prolongs Survival in a Mouse Model of Glioblastoma
2023Open Access
Data from Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma
2023Open Access
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Frequent Co-authors

Sandya Liyanarachchi(11), Massimo Negrini(6), George A. Calin(6), Albert de la Chapelle(6), Manuela Ferracin(5), Carlo M. Croce(5), Milena S. Nicoloso(5), Christoph Plass(5), Ravi Gupta(5), Yanrong Ji(4), Mircea Ivan(4), Masayoshi Shimizu(4), Hao Sun(4), Sharmistha Pal(4), Nadia Dahmane(4), Manoj Kandpal(4), Victor X. Jin(4), Kenneth P. Nephew(4), Ritu Kulshreshtha(3), Riccardo Spizzo(3)