Joshua Loving

Biochemistry, Genetics and Molecular Biology · Life Sciences

6h-index166citations15works0.02yr avg
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Research Topics

Genomics and Phylogenetic Studies(6), Bacterial Identification and Susceptibility Testing(6), Algorithms and Data Compression(2), Clostridium difficile and Clostridium perfringens research(2), Mycobacterium research and diagnosis(2)

Publications15 total

Sequential learning for pan-tumor detection of metastatic disease progression.
Journal of Clinical Oncology·2023
Using machine learning on real-world data to predict metastatic status.
Journal of Clinical Oncology·2022
Predicting Antimicrobial Resistance in the Intensive Care Unit
arXiv (Cornell University)·2021· 2 citedOpen Access
Customizable Natural Language Processing Biomarker Extraction Tool
JCO Clinical Cancer Informatics·2021· 12 citedOpen Access
531. Practical and Evidence-Based Considerations for Implementation of Bacterial Whole-Genome Sequencing Within Longitudinal Infection Control Practice
Open Forum Infectious Diseases·2019· 1 citedOpen Access
2441. Automated, Rapid Detection of Potential Healthcare-Acquired Infection Clusters Based on Microbiology And Patient Geotemporal Data
Open Forum Infectious Diseases·2019Open Access
A core genome approach that enables prospective and dynamic monitoring of infectious outbreaks
Scientific Reports·2019· 11 citedOpen Access
ICE volume 40 issue 6 Cover and Front matter
Infection Control and Hospital Epidemiology·2019Open Access
Integration of genomic and clinical data augments surveillance of healthcare-acquired infections
Infection Control and Hospital Epidemiology·2019· 37 cited
A novel core genome approach to enable prospective and dynamic monitoring of infectious outbreaks
2018· 1 citedOpen Access
An SIMD Algorithm for Wraparound Tandem Alignment
Lecture notes in computer science·2017· 4 cited
Bit-parallel and SIMD alignment algorithms for biological sequence analysis
OpenBU/Boston University Institutional Repository (Boston University)·2017· 1 cited
BitPAl: a bit-parallel, general integer-scoring sequence alignment algorithm
Bioinformatics·2014· 33 citedOpen Access
VNTRseek—a computational tool to detect tandem repeat variants in high-throughput sequencing data
Nucleic Acids Research·2014· 45 citedOpen Access
A Bit-Parallel, General Integer-Scoring Sequence Alignment Algorithm
Lecture notes in computer science·2013· 19 cited

Frequent Co-authors

Juan J. Carmona(6), Brian D. Gross(6), Raivo Kolde(5), Helen van Aggelen(5), Mary M. Fortunato-Habib(5), Gary Benson(4), Yözen Hernández(3), Matthew J. Rioth(3), John T. Fallon(3), Guiqing Wang(3), Doyle V. Ward(2), Andrew Hoss(2), Raja Kathirvel(2), Jeffery A. Halperin(2), Douglas J. Buell(2), Brian E. Wong(2), Judy L. Ashworth(2), Li-Yi Xu(2), Bruce Barton(2), Péter Lázár(2)