Vipin Sachdeva

Manipal Academy of Higher Education — India

Computer Science · Physical Sciences

13h-index673citations43works0.02yr avg
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Research Topics

Parallel Computing and Optimization Techniques(15), Genomics and Phylogenetic Studies(10), Advanced Data Storage Technologies(8), Gene expression and cancer classification(6), Low-power high-performance VLSI design(5)

Publications43 total

Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry
Nature Communications·2022· 93 citedOpen Access
Prediction of ternary complex structures using molecular dynamics and proteomics
Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
Prediction of ternary complex structures using molecular dynamics and proteomics
Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
Optimized Mappings for Symmetric Range-Limited Molecular Force Calculations on FPGAs
2022· 3 cited
Atomic-Resolution Prediction ofDegrader-mediated Ternary Complex Structuresby Combining Molecular Simulations withHydrogen Deuterium Exchange
2022· 2 citedOpen Access
Motorsport Data Acquisition System and Live Telemetry using FPGA based CAN controller
Journal of Physics Conference Series·2022· 6 citedOpen Access
Atomic-Resolution Prediction of Degrader-mediated Ternary Complex Structures by Combining Molecular Simulations with Hydrogen Deuterium Exchange
2021· 6 citedOpen Access
System-Level Modeling of GPU/FPGA Clusters for Molecular Dynamics Simulations
2021· 8 cited
Upgrade of FPGA Range-Limited Molecular Dynamics to Handle Hundreds of Processors
2021· 11 cited
Particle Mesh Ewald for Molecular Dynamics in OpenCL on an FPGA Cluster
2021· 1 citedOpen Access
An OpenCL 3D FFT for Molecular Dynamics Simulations on Multiple FPGAs
arXiv (Cornell University)·2020· 3 citedOpen Access
An OpenCL 3D FFT for Molecular Dynamics Distributed Across Multiple FPGAs
arXiv (Cornell University)·2020· 1 citedOpen Access
A Communication-Efficient Multi-Chip Design for Range-Limited Molecular Dynamics
2020· 7 cited
Execution of Complete Molecular Dynamics Simulations on Multiple FPGAs
2020· 7 cited
Fully integrated FPGA molecular dynamics simulations
2019· 48 citedOpen Access
Molecular Dynamics Range-Limited Force Evaluation Optimized for FPGAs
2019· 16 cited
Fully Integrated On-FPGA Molecular Dynamics Simulations
arXiv (Cornell University)·2019· 8 citedOpen Access
完全集積化FPGA分子動力学シミュレーション【JST・京大機械翻訳】
ACM Proceedings·2019
K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity
BMC Bioinformatics·2017· 18 citedOpen Access
OpenCL for HPC with FPGAs: Case study in molecular electrostatics
2017· 19 cited
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Frequent Co-authors

Woody Sherman(13), Martin Herbordt(13), Kirk E. Jordan(8), David A. Bader(6), Chen Yang(6), Tong Geng(6), Chunshu Wu(6), Derek MacPherson(5), Barmak Mostofian(5), Taras Dauzhenka(5), Samuel Lotz(5), T. Dwight McGee(5), Rafal Wiewiora(5), Zachary A. McDargh(5), Fen Pei(5), Rajat Kumar Pal(5), Tanner Wilkerson(5), Shourya Jain(5), Samuel Sparks(5), Yunxing Li(5)