Xiaoqing Ru

Wenzhou Medical University — China

Computer Science · Physical Sciences

9h-index365citations16works1.02yr avg
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Research Topics

Computational Drug Discovery Methods(8), Machine Learning in Bioinformatics(7), Protein Structure and Dynamics(4), Machine Learning in Materials Science(4), Genomics and Phylogenetic Studies(3)

Publications16 total

Editorial: Advances in circRNA research: disease associations and diagnostic innovations
Frontiers in Genetics·2025Open Access
Genome-wide identification of the TGA transcription factor family in Populus alba × Populus glandulosa and functional validation of PagTGA7b in salt tolerance
Plant Stress·2025Open Access
Drug–Drug Interaction Prediction: Paradigm Shifts, Key Bottlenecks, and Future Directions
Wiley Interdisciplinary Reviews Computational Molecular Science·2025Open Access
In silico methods for drug-target interaction prediction
Cell Reports Methods·2025· 4 citedOpen Access
Incorporating Neighboring Protein Features for Enhanced Drug–Target Interaction Prediction: A Comparative Analysis of Similarity-Based Alignment Methods
Journal of Chemical Information and Modeling·2025· 1 cited
Genome-Wide Identification of the TGA transcription factor Family in Populus alba × Populus glandulosa and Functional Validation of PagTGA7b in Salt Tolerance
SSRN Electronic Journal·2025Open Access
Identify potential drug candidates within a high-quality compound search space
Briefings in Bioinformatics·2024· 2 citedOpen Access
Optimization of drug–target affinity prediction methods through feature processing schemes
Bioinformatics·2023· 16 citedOpen Access
NerLTR-DTA: drug–target binding affinity prediction based on neighbor relationship and learning to rank
Bioinformatics·2022· 65 cited
Application of Machine Learning for Drug–Target Interaction Prediction
Frontiers in Genetics·2021· 62 citedOpen Access
Current status and future prospects of drug–target interaction prediction
Briefings in Functional Genomics·2021· 26 cited
Application of learning to rank in bioinformatics tasks
Briefings in Bioinformatics·2020· 14 cited
Exploration of the correlation between GPCRs and drugs based on a learning to rank algorithm
Computers in Biology and Medicine·2020· 31 cited
Selecting Essential MicroRNAs Using a Novel Voting Method
Molecular Therapy — Nucleic Acids·2019· 38 citedOpen Access
Incorporating Distance-Based Top-n-gram and Random Forest To Identify Electron Transport Proteins
Journal of Proteome Research·2019· 90 cited
Identification of Phage Viral Proteins With Hybrid Sequence Features
Frontiers in Microbiology·2019· 16 citedOpen Access

Frequent Co-authors

Quan Zou(12), Xiucai Ye(4), Lihong Li(3), Tetsuya Sakurai(3), Lei Xu(2), Chen Lin(2), Lifeng Xu(2), Jiechen Wang(2), Hongzhen Liu(2), Huihui Zhang(2), Rong Song(1), Peigang Cao(1), Lida Wang(1), Lihong Li(1), Hui Ding(1), Chunyu Wang(1), Han Wu(1), Shulin Zhao(1), Chao Zha(1), Xin Gao(1)