Mark Chaisson

University of Southern California — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

43h-index90.9kcitations117works10.72yr avg
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Research Topics

Genomics and Phylogenetic Studies(71), Chromosomal and Genetic Variations(33), RNA and protein synthesis mechanisms(29), Genomics and Rare Diseases(22), Genomic variations and chromosomal abnormalities(19)

Publications112 total

Author Correction: Genotyping sequence-resolved copy number variation using pangenomes reveals paralog-specific global diversity and expression divergence of duplicated genes
Nature Genetics·2026Open Access
TRcompDB v2.0, a global reference of human tandem repeat composition and mutation rate from long-read assemblies
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
Long-read sequencing identifies <i>FGF14</i> repeat expansions in Parkinson’s disease
Brain·2025Open Access
Structural and transduction patterns of human-specific polymorphic SVA insertions
Mobile DNA·2025Open Access
Genotyping sequence-resolved copy number variation using pangenomes reveals paralog-specific global diversity and expression divergence of duplicated genes
Nature Genetics·2025Open Access
Author Correction: Complex genetic variation in nearly complete human genomes
Nature·2025· 1 citedOpen Access
Long-read sequencing identifies <i>FGF14</i> repeat expansions in Parkinson’s disease
2025· 1 citedOpen Access
Complex genetic variation in nearly complete human genomes
Nature·2025· 43 citedOpen Access
Identification of <scp>GGC</scp> Repeat Expansions in <scp><i>ZFHX3</i></scp> among Chilean Movement Disorder Patients
Movement Disorders·2025· 1 citedOpen Access
Identification of GGC Repeat Expansions in <i>ZFHX3</i> Among Chilean Movement Disorder Patients
2025Open Access
Long-read sequencing of hundreds of diverse brains provides insight into the impact of structural variation on gene expression and DNA methylation
2024· 11 citedOpen Access
An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes
Genome Research·2024· 1 citedOpen Access
Complex genetic variation in nearly complete human genomes
2024· 26 citedOpen Access
Genotyping sequence-resolved copy number variation using pangenomes reveals paralog-specific global diversity and expression divergence of duplicated genes
2024· 1 citedOpen Access
A population-scale map of human tandem repeat composition and mutation dynamics from long-read assemblies
2024· 4 citedOpen Access
VISTA: an integrated framework for structural variant discovery
Briefings in Bioinformatics·2024· 3 citedOpen Access
Analysis and benchmarking of small and large genomic variants across tandem repeats
Nature Biotechnology·2024· 59 citedOpen Access
A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography
Molecular Biology and Evolution·2024· 17 citedOpen Access
Chromosome level genome assembly of the Etruscan shrew Suncus etruscus
Scientific Data·2024· 1 citedOpen Access
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
Nature Biotechnology·2024· 56 citedOpen Access
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Frequent Co-authors

Evan E. Eichler(27), Tobias Marschall(17), Katherine M. Munson(15), Jan O. Korbel(14), David Porubský(14), Adam M. Phillippy(14), Benedict Paten(14), Paul Flicek(11), Arang Rhie(10), Sergey Koren(10), Joyce Lee(10), Scott E. Devine(10), Charles Lee(10), Ashley D. Sanders(10), Peter A. Audano(10), Peter Ebert(10), Trevor Pesout(9), Ryan E. Mills(9), Jana Ebler(9), William T. Harvey(9)