Silke D Werle

Universität Ulm — Germany

Biochemistry, Genetics and Molecular Biology · Life Sciences

8h-index200citations30works1.12yr avg
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Research Topics

Gene Regulatory Network Analysis(9), Bioinformatics and Genomic Networks(6), Biomedical Text Mining and Ontologies(5), Computational Drug Discovery Methods(4), Mobile Health and mHealth Applications(4)

Publications30 total

CLL to Richter syndrome: Integrating network strategies with experiments elucidating disease drivers and personalized therapies
Science Advances·2025Open Access
Uncovering the Understanding of the Concept of Patient Similarity in Cancer Research and Treatment: Scoping Review
Journal of Medical Internet Research·2025· 1 citedOpen Access
Uncovering the Understanding of the Concept of Patient Similarity in Cancer Research and Treatment: Scoping Review (Preprint)
2025Open Access
Boolean network modeling and its integration with experimental read-outs
Die Pathologie·2024· 1 cited
Identifications of Similarity Metrics for Patients With Cancer: Protocol for a Scoping Review
JMIR Research Protocols·2024· 5 citedOpen Access
Prediction of resistance to bevacizumab plus FOLFOX in metastatic colorectal cancer—Results of the prospective multicenter PERMAD trial
PLoS ONE·2024· 1 citedOpen Access
Identifications of Similarity Metrics for Patients With Cancer: Protocol for a Scoping Review (Preprint)
2024Open Access
Prediction of resistance to bevacizumab plus FOLFOX in metastatic colorectal cancer using a multi-marker panel and a machine-learning approach: Final results of the prospective multicenter PERMAD trial.
Journal of Clinical Oncology·2024Open Access
GatekeepR: an R Shiny application for the identification of nodes with high dynamic impact in Boolean networks
Bioinformatics·2024· 2 citedOpen Access
The Necessity of Interoperability to Uncover the Full Potential of Digital Health Devices
JMIR Medical Informatics·2023· 1 citedOpen Access
NEMO – Eine App für das Nebenwirkungs-Management in der gastrointestinalen Onkologie (NEMO)
Zeitschrift für Gastroenterologie·2023
A systems biology approach to define mechanisms, phenotypes, and drivers in PanNETs with a personalized perspective
npj Systems Biology and Applications·2023· 6 citedOpen Access
The Necessity of Interoperability to Uncover the Full Potential of Digital Health Devices (Preprint)
2023Open Access
Leveraging quantum computing for dynamic analyses of logical networks in systems biology
Patterns·2023· 14 citedOpen Access
<i>CANTATA—</i>prediction of missing links in Boolean networks using genetic programming
Bioinformatics·2022· 3 citedOpen Access
Response to the letter to the editor: On the feasibility of dynamical analysis of network models of biochemical regulation
Bioinformatics·2022Open Access
Interaction Empowerment in Mobile Health: Concepts, Challenges, and Perspectives
JMIR mhealth and uhealth·2022· 35 citedOpen Access
Identification of dynamic driver sets controlling phenotypical landscapes
Computational and Structural Biotechnology Journal·2022· 4 citedOpen Access
Discrete Logic Modeling of Cell Signaling Pathways
Methods in molecular biology·2022· 6 cited
Interaction Empowerment in Mobile Health: Concepts, Challenges, and Perspectives (Preprint)
2021
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Frequent Co-authors

Hans A. Kestler(30), Julian Schwab(23), Nensi Ikonomi(20), Udo X. Kaisers(9), Thomas Seufferlein(9), Felix M. Weidner(8), Axel Fürstberger(8), Johann M. Kraus(8), Martin Holderried(7), Peter Kühn(6), Angelika Kestler(5), Franz Jobst(5), Ludwig Lausser(5), Rolf Hühne(4), Gunnar Völkel(4), Thomas Gscheidmeier(4), Alexander Groß(4), Julien Balig(4), Klaus A. Kuhn(4), Oliver Kohlbacher(4)