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University of Wisconsin–Madison — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

50h-index11.2kcitations223works4.02yr avg
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Research Topics

Genomics and Chromatin Dynamics(61), Epigenetics and DNA Methylation(46), Gene expression and cancer classification(36), RNA modifications and cancer(35), RNA and protein synthesis mechanisms(29)

Publications218 total

Causal gene regulatory network inference from Perturb-seq via adaptive instrumental variable modeling
2026Open Access
Oncogenic DEAD-box ATPase DDX41 establishes transcript ensembles via CLK3-dependent and -independent mechanisms
Nature Communications·2025Open Access
Inflammatory signaling selectively disrupts GATA factor-regulated networks governing erythroid differentiation and hemoglobin synthesis
Blood·2025Open Access
Sex-Specific Differential DNA Methylation in Mild Cognitive Impairment and Alzheimer’s Disease
2025· 1 citedOpen Access
Generation of Hoxa11-3XFLAG and Hoxd11-3XFLAG alleles to investigate Hox11 genome-wide binding
Developmental Biology·2025· 1 cited
Systematic Background Selection for Enhanced Contrastive Dimension Reduction
2025Open Access
FlyVISTA, an integrated machine learning platform for deep phenotyping of sleep in <i>Drosophila</i>
Science Advances·2025· 15 citedOpen Access
Whole genome methylation sequencing in blood from persons with mild cognitive impairment and dementia due to Alzheimer's disease identifies cognitive status
Alzheimer s & Dementia·2025· 6 citedOpen Access
Whole genome methylation sequencing in blood identifies extensive differential DNA methylation in mild cognitive impairment (MCI)
Alzheimer s & Dementia·2024Open Access
Whole genome methylation sequencing in blood reveals differential DNA methylation in pathways associated with mitochondrial function in persons with late‐onset dementia due to Alzheimer’s disease (AD)
Alzheimer s & Dementia·2024Open Access
Whole genome methylation sequencing identifies sex‐specific DNA methylation levels in late onset dementia due to Alzheimer’s disease
Alzheimer s & Dementia·2024Open Access
Harnessing the regenerative potential of interleukin11 to enhance heart repair
Nature Communications·2024· 11 citedOpen Access
Building a Clinical Genetic <i>GATA2</i> Variant Curation System with Activity Metrics
Blood·2024
GEEES: inferring cell-specific gene–enhancer interactions from multi-modal single-cell data
Bioinformatics·2024· 1 citedOpen Access
Whole genome methylation sequencing in blood from persons with mild cognitive impairment and dementia due to Alzheimer’s disease identifies cognitive status
2024· 1 citedOpen Access
3094 – ESTABLISHING GATA2-DEPENDENT HEMATOPOIETIC SIGNALING NETWORKS AND PATHOGENIC MECHANISMS
Experimental Hematology·2024Open Access
3150 – GATA2 DETERMINES HEMATOPOIETIC STEM/PROGENITOR CELL RESPONSES TO OPPORTUNISTIC FUNGAL INFECTION
Experimental Hematology·2024
Joint Tensor Modeling of Single Cell 3D Genome and Epigenetic Data with Muscle
Journal of the American Statistical Association·2024· 2 citedOpen Access
Empirical Bayes spline model learns multi-way genomic interactions from single cell 3D genome data
2024Open Access
Integrative annotation scores of variants for impact on RNA binding protein activities
Bioinformatics·2024Open Access
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Frequent Co-authors

Emery H. Bresnick(7), Dongjun Chung(5), Mark J. van der Laan(5), Kirby D. Johnson(4), Pei Fen Kuan(4), John Svaren(4), Kun Liang(4), Henriette O’Geen(3), Amelia K. Linnemann(3), Kyunghee Choi(3), Peggy Farnham(3), Patricia J. Kiley(3), Rajendran Sanalkumar(3), Emery H. Bresnick(3), Guannan Sun(3), Sunyoung Shin(3), Wei Xu(3), Hyonho Chun(2), Tohru Fujiwara(2), Yoon-A Kang(2)