Irene Papatheodorou

Bioinformatics Institute — Russia

Biochemistry, Genetics and Molecular Biology · Life Sciences

46h-index20.2kcitations158works2.02yr avg
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Research Topics

Single-cell and spatial transcriptomics(41), Cancer Genomics and Diagnostics(32), Bioinformatics and Genomic Networks(24), Gene expression and cancer classification(19), Genomics and Phylogenetic Studies(15)

Publications110 total

All roads lead to Rome: integrated physiological and transcriptomic analysis of cacao drought response reveals different ways to achieve tolerance in two hybrid clones
Frontiers in Plant Science·2026Open Access
Expression Atlas in 2026: enabling FAIR and open expression data through community collaboration and integration
Nucleic Acids Research·2025· 2 citedOpen Access
Gramene 2025: expanded comparative genomics and pathway resources, integrated search, and pan-genome portals for crop research
Nucleic Acids Research·2025· 2 citedOpen Access
The comparative pathology workbench: An update
Journal of Pathology Informatics·2025Open Access
Revising the ortholog conjecture in cross-species comparison of single-cell transcriptomics
2025Open Access
The Biodiversity Cell Atlas: mapping the tree of life at cellular resolution
Nature·2025· 3 cited
ScGOclust: leveraging gene ontology to find functionally analogous cell types between distant species
Bioinformatics·2025· 1 citedOpen Access
P320 The comparative pathology workbench: an integrated web-based tool for the interactive analysis of visual biomedical data
2025
FP27 Clinical and research data integration using a common coordinate framework for the gut
2025
P24 Layer-specific quantification of immune cells and fibrotic changes in fibrostenosing crohn’s disease
2025
scDenorm: a denormalisation tool for integrating single-cell transcriptomics data
2025Open Access
Genetic and Pharmacological Inhibition of Metabotropic Glutamate Receptor Signalling Extends Lifespan in <i>Drosophila</i>
Aging Cell·2025Open Access
Decoding MASLD Progression: A Molecular Trajectory-Based Framework for Modelling Disease Dynamics
2025· 1 citedOpen Access
Alleviating batch effects in cell type deconvolution with SCCAF-D
Nature Communications·2024· 3 citedOpen Access
Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research
Frontiers in Genetics·2024Open Access
Single-cell RNA sequencing offers opportunities to explore the depth of physiology, adaptation, and biochemistry in non-model organisms exposed to pollution
Comparative Biochemistry and Physiology Part D Genomics and Proteomics·2024· 2 cited
Multi-omic lineage tracing predicts the transcriptional, epigenetic and genetic determinants of cancer evolution
Nature Communications·2024· 9 citedOpen Access
Revising the ortholog conjecture in cross-species comparison of scRNA-seq data
2024Open Access
Integrated Proteomics Analysis of Baseline Protein Expression in Pig Tissues
Journal of Proteome Research·2024· 7 citedOpen Access
Pan genome resources for grapevine
Acta Horticulturae·2024· 2 cited
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Frequent Co-authors

Alvis Brāzma(17), Nancy George(15), Pablo Moreno(14), Juan Antonio Vizcaíno(11), Silvie Fexová(9), Anja Füllgrabe(8), Alfonso Muñoz-Pomer Fuentes(7), Suhaib Mohammed(7), Sarah A. Teichmann(7), Doreen Ware(7), Zhichao Miao(7), Haider Iqbal(6), Robert Petryszak(6), Jonathan Manning(6), Tony Burdett(6), Marcela K Tello-Ruiz(6), Deepti J Kundu(6), Janet M. Thornton(6), Nuno A. Fonseca(5), Pankaj Jaiswal(5)