Khalil Abudahab

University of Oxford — United Kingdom

Biochemistry, Genetics and Molecular Biology · Life Sciences

29h-index9.8kcitations76works0.62yr avg
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Research Topics

Antibiotic Resistance in Bacteria(26), Genomics and Phylogenetic Studies(20), SARS-CoV-2 and COVID-19 Research(15), Bacterial Identification and Susceptibility Testing(13), Vibrio bacteria research studies(8)

Publications63 total

Monitoring antimicrobial resistance trends from global genomics data: amr.watch
PLOS Global Public Health·2025· 1 citedOpen Access
PATH-SAFE Consortium Recommendations for Genomic Surveillance of Food-Borne Diseases Escherichia Coli and Listeria Monocytogenes
FSA research and evidence.·2025Open Access
PATH-SAFE Consortium Recommendations for Genomic Surveillance of Foodborne Diseases, Using Salmonella as an Exemplar
FSA research and evidence.·2025Open Access
Monitoring of vaccine targets and interventions using global genome data: vaccines.watch
2025
amr.watch – monitoring antimicrobial resistance trends from global genomics data
2025· 2 citedOpen Access
Emergence of Carbapenemase-Producing Escherichia Coli in Acute Care Hospitals in 36 European Countries: Results from the Survey of Carbapenem- and/or Colistin-Resistant Enterobacterales (CCRE Survey), 2019
SSRN Electronic Journal·2025Open Access
Persistent Spread of Carbapenemase-Producing Klebsiella Pneumoniae in Acute Care Hospitals in 36 European Countries: Results from the Survey of Carbapenem- and/or Colistin-Resistant Enterobacterales (CCRE Survey), 2019
SSRN Electronic Journal·2025· 1 citedOpen Access
Methodological Approach to Identify and Expand the Volume of Antimicrobial Resistance (AMR) Data in the Human Health Sector in Low- and Middle-Income Countries in Asia: Implications for Local and Regional AMR Surveillance Systems Strengthening
Clinical Infectious Diseases·2023· 5 citedOpen Access
Genomic surveillance of <i>Salmonella</i> spp. in the Philippines during 2013–2014
Transactions of the Royal Society of Tropical Medicine and Hygiene·2022· 7 citedOpen Access
COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study
Scientific Reports·2022· 64 citedOpen Access
Europe-wide expansion and eradication of multidrug-resistant Neisseria gonorrhoeae lineages: a genomic surveillance study
The Lancet Microbe·2022· 85 citedOpen Access
Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission
Nature Communications·2022· 17 citedOpen Access
Genomic Surveillance of <i>Salmonella</i> spp. in the Philippines, 2013-2014
2022Open Access
The impact of viral mutations on recognition by SARS-CoV-2 specific T cells
iScience·2021· 89 citedOpen Access
Genomic surveillance of Acinetobacter baumannii in the Philippines, 2013–2014
Western Pacific surveillance response journal·2021· 9 citedOpen Access
Rapid Genomic Characterization and Global Surveillance of <i>Klebsiella</i> Using Pathogenwatch
Clinical Infectious Diseases·2021· 165 citedOpen Access
Implementing Whole-Genome Sequencing for Ongoing Surveillance of Antimicrobial Resistance: Exemplifying Insights Into<i>Klebsiella pneumoniae</i>
Clinical Infectious Diseases·2021· 13 citedOpen Access
Clones and Clusters of Antimicrobial-Resistant<i>Klebsiella</i>From Southwestern Nigeria
Clinical Infectious Diseases·2021· 46 citedOpen Access
Integrating Scalable Genome Sequencing Into Microbiology Laboratories for Routine Antimicrobial Resistance Surveillance
Clinical Infectious Diseases·2021· 29 citedOpen Access
Complexity of Genomic Epidemiology of Carbapenem-Resistant <i>Klebsiella pneumoniae</i> Isolates in Colombia Urges the Reinforcement of Whole Genome Sequencing-Based Surveillance Programs
Clinical Infectious Diseases·2021· 41 citedOpen Access
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Frequent Co-authors

David M. Aanensen(44), Silvia Argimón(28), Celia Carlos(21), June M Gayeta(20), Anthony Underwood(19), Marietta L Lagrada(19), Agnettah M Olorosa(19), Ben Taylor(17), John Stelling(17), Corin Yeats(16), Monica Abrudan(13), Pilar Donado-Godoy(13), Iruka N. Okeke(13), Polle Krystle V Macaranas(13), Sonia Sia(13), Richard Goater(12), Mihir Kekre(12), Matthew T. G. Holden(11), Sophia David(11), Nicole E. Wheeler(11)