Farhia Kabeer

University of British Columbia — Canada

Biochemistry, Genetics and Molecular Biology · Life Sciences

11h-index1.7kcitations34works0.82yr avg
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Research Topics

Cancer Genomics and Diagnostics(23), Single-cell and spatial transcriptomics(20), Cancer Cells and Metastasis(6), Gene expression and cancer classification(5), Evolution and Genetic Dynamics(4)

Publications34 total

Somatic copy number mutations contribute to fitness in transplantation models of spontaneous human breast cancer metastasis
2025Open Access
Abstract 4298: Investigating the potential of EO3001 as a therapeutic agent for clear cell ovarian cancers harboring ARID1A mutations
Cancer Research·2025
Abstract 1269: Development of humanized PDX mouse model for high grade serous ovarian cancer
Cancer Research·2025
Single-cell decoding of drug induced transcriptomic reprogramming in triple negative breast cancers
Genome biology·2024· 4 citedOpen Access
Abstract A037: Exploring the therapeutic effectiveness of EO3001 in the treatment of clear cell ovarian cancers with ARID1A mutations
Cancer Research·2024
Single cell decoding of drug induced transcriptomic reprogramming in triple negative breast cancers
2023· 1 citedOpen Access
Cancer phylogenetic tree inference at scale from 1000s of single cell genomes
Peer Community Journal·2023· 22 citedOpen Access
Identification of transcriptional programs using dense vector representations defined by mutual information with GeneVector
Nature Communications·2023· 6 citedOpen Access
Supplementary Material for "Cancer phylogenetic tree inference at scale from 1000s of single cell genomes"
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Abstract 2182: The evolution of high grade serous ovarian cancer under the pressure of non-cytotoxic and cytotoxic treatment
Cancer Research·2023
Single-cell genomic variation induced by mutational processes in cancer
Nature·2022· 143 citedOpen Access
GeneVector: Identification of transcriptional programs using dense vector representations defined by mutual information
2022· 5 citedOpen Access
Clonal fitness inferred from time-series modelling of single-cell cancer genomes
Nature·2021· 165 citedOpen Access
Evolutionary tracking of cancer haplotypes at single-cell resolution
2021· 5 citedOpen Access
The impact of mutational processes on structural genomic plasticity in cancer cells
2021· 5 citedOpen Access
Dynamics of single cell genomes and transcriptomes in response to chemotherapies
Open Collections·2021Open Access
Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data
PLoS Computational Biology·2020· 30 citedOpen Access
Single cell fitness landscapes induced by genetic and pharmacologic perturbations in cancer
2020· 6 citedOpen Access
Cancer phylogenetic tree inference at scale from 1000s of single cell genomes
2020· 23 citedOpen Access
Abstract PD8-05: Single-cell analysis of breast cancer metastasis using patient-derived xenograft model reveals clonal relationship between primary tumor and its metastases
Cancer Research·2020
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Frequent Co-authors

Samuel Aparício(24), Daniel Lai(23), Sohrab P. Shah(20), Ciara H. O’Flanagan(17), Justina Biele(16), Jazmine Brimhall(14), Richard A. Moore(13), Kieran R. Campbell(13), Andrew McPherson(12), Sohrab Salehi(11), Teresa Ruiz de Algara(10), Beixi Wang(10), Andrew J. Mungall(10), Marc Williams(10), Nicole Rusk(10), Emma Laks(9), Tehmina Masud(9), Peter Eirew(9), Nicholas Ceglia(9), Mirela Andronescu(9)