Prabin Baral

Florida International University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

11h-index512citations38works2.02yr avg
OpenAlex↗ORCID↗Google Scholar↗Lab page↗

Accepting Students?

No reports yet. Know if this professor is taking students?

Research Topics

vaccines and immunoinformatics approaches(11), Protein Structure and Dynamics(9), SARS-CoV-2 and COVID-19 Research(8), Viral Infections and Outbreaks Research(8), Computational Drug Discovery Methods(7)

Publications38 total

EMoMiS: A pipeline for epitope-based molecular mimicry search in protein structures with potential applications to SARS-CoV-2
Computational and Structural Biotechnology Journal·2026Open Access
Grand canonical Monte Carlo and deep learning assisted enhanced sampling to characterize the distribution of Mg2+ and influence of the Drude polarizable force field on the stability of folded states of the twister ribozyme
The Journal of Chemical Physics·2024· 6 citedOpen Access
Balancing Group 1 Monoatomic Ion–Polar Compound Interactions in the Polarizable Drude Force Field: Application in Protein and Nucleic Acid Systems
The Journal of Physical Chemistry B·2024· 4 citedOpen Access
Grand Canonical Monte Carlo and Deep Learning Assisted Enhanced Sampling to Characterize the Distribution of Mg2+ and Influence of the Drude Polarizable Force Field on the Stability of Folded States of the Twister Ribozyme
2024
Exploring temperature-dependent conformational changes in P38 MAP kinases involved in inflammation and acute lung injury
Biophysical Journal·2024Open Access
Evaluating protein binding interfaces with transformer networks
Nature Machine Intelligence·2023· 26 cited
The oncogenic circular RNA circ_63706 is a potential therapeutic target in sonic hedgehog-subtype childhood medulloblastomas
Acta Neuropathologica Communications·2023· 13 citedOpen Access
Epitopedia: identifying molecular mimicry between pathogens and known immune epitopes
ImmunoInformatics·2023· 8 citedOpen Access
PIsToN: Evaluating Protein Binding Interfaces with Transformer Networks (dataset)
2023Open Access
PIsToN: Evaluating Protein Binding Interfaces with Transformer Networks (dataset)
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
PIsToN: Evaluating Protein Binding Interfaces with Transformer Networks (dataset)
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
PIsToN: Evaluating Protein Binding Interfaces with Transformer Networks (dataset)
2023Open Access
PIsToN: Evaluating Protein Binding Interfaces with Transformer Networks
2023· 3 citedOpen Access
Molecular Modeling and Simulation of the Peptidoglycan Layer of Gram-Positive Bacteria <i>Staphylococcus aureus</i>
Journal of Chemical Information and Modeling·2022· 56 cited
Immunoinformatic screening of Marburgvirus epitopes and computational investigations of epitope-allele complexes
International Immunopharmacology·2022· 2 cited
Potential Autoimmunity Resulting from Molecular Mimicry between SARS-CoV-2 Spike and Human Proteins
Viruses·2022· 92 citedOpen Access
EMoMiS: A Pipeline for Epitope-based Molecular Mimicry Search in Protein Structures with Applications to SARS-CoV-2
2022· 9 citedOpen Access
Changes in the receptor-binding interface may cause immune evasion by the SARS-CoV-2 delta variant b.1.617.2
Biophysical Journal·2022Open Access
Significance of the RBD mutations in the SARS-CoV-2 Omicron: from spike opening to antibody escape and cell attachment
2022· 6 citedOpen Access
Immunoinformatic Screening of Marburgvirus Epitopes and Computational Investigations of Epitope-Allele Complexes
SSRN Electronic Journal·2022Open Access
page 1 of 2Next →

Frequent Co-authors

Prem P. Chapagain(33), Bernard S. Gerstman(17), Vitalii Stebliankin(15), Giri Narasimhan(14), Rudramani Pokhrel(11), Nisha Bhattarai(10), Elumalai Pavadai(8), Md Lokman Hossen(7), Kalai Mathee(7), Janelle Nunez-Castilla(6), Christian A. Balbin(6), Masrur Sobhan(6), Trevor Cickovski(6), Ananda Mohan Mondal(6), Jessica Siltberg-Liberles(6), Azam Shirali(6), Alexander D. MacKerell(4), Robert V. Stahelin(3), Jae H. Park(2), Martin Handfield(2)