Marco Salemi

University of Florida — United States

Immunology and Microbiology · Life Sciences

55h-index12.0kcitations349works2.22yr avg
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Research Topics

HIV Research and Treatment(104), HIV/AIDS Research and Interventions(44), Mosquito-borne diseases and control(44), Genomics and Phylogenetic Studies(42), SARS-CoV-2 and COVID-19 Research(42)

Publications348 total

Exploring Cooperation among Social Pathogens: A Computational Perspective
FEMS Microbiology Reviews·2026Open Access
vir2vec: A Viral Genome-Wide Viral Embedding
2025Open Access
CholeraSeq: a comprehensive genomic pipeline for cholera surveillance and near real-time outbreak investigation
Bioinformatics·2025Open Access
Virome and Microbiome of Florida Bats Illuminate Viral Co-Infections, Dietary Viral Signals, and Gut Microbiome Shifts
Microorganisms·2025Open Access
FIRST RECORD OF THE SUBTERRANEAN TERMITE RETICULITERMES AEGEUS IN ITALY: AN UNEXPECTED FINDING IN A PUBLIC PARK IN VENICE
Redia·2025Open Access
WITHDRAWN: Defective HIV DNA genomes provide ancestralrelevance critical for phylogenetic inference of reservoir dynamics
2025Open Access
A comparative analysis of the role of containment policies, vaccination strategies and virus variants in the COVID-19 pandemic across nine European countries
Scientific Reports·2025· 1 citedOpen Access
SARITA: a large language model for generating the S1 subunit of the SARS-CoV-2 spike protein
Briefings in Bioinformatics·2025· 5 citedOpen Access
Behavioral and Demographic Profiles of HIV Transmission and Exposure Networks in Florida: Network Analysis of HIV Contact Tracing Data
JMIR Public Health and Surveillance·2025· 1 citedOpen Access
What to consider when developing a new molecular HIV surveillance tool: Perspectives of key stakeholders working in HIV prevention and treatment
2025
Genomic Surveillance of Climate-Amplified Cholera Outbreak, Malawi, 2022–2023
Emerging infectious diseases·2025· 3 citedOpen Access
A Case Cluster of Aseptic Meningitis Associated With a Newly Identified Recombinant Echovirus 6/Coxsackievirus B1 Enterovirus
The Journal of Infectious Diseases·2025· 1 citedOpen Access
Dynamic Networks of Methicillin-Resistant <i>Staphylococcus aureus</i> in Communities Drive Hospital Transmission
Open Forum Infectious Diseases·2025· 1 citedOpen Access
SEHI-PPI: An End-to-End Sampling-Enhanced Human-Influenza Protein-Protein Interaction Prediction Framework with Double-View Learning
2025Open Access
Dengue and Other Arbovirus Infections among Schoolchildren, Haiti, 2021
Emerging infectious diseases·2025· 1 citedOpen Access
A case-cluster of aseptic meningitis associated with a newly identified recombinant echovirus6/CoxsackievirusB1 enterovirus
2024Open Access
SARITA: A Large Language Model for Generating the S1 Subunit of the SARS-CoV-2 Spike Protein
2024· 2 citedOpen Access
Sequencing Efforts and Epidemiological Trends: Analyzing SARS-CoV-2 Dynamics Across European Nations
2024· 2 cited
A country-wise comparative analysis of the role of containment policies, vaccination strategies, and virus variants in the COVID-19 pandemic in Europe (Preprint)
2024Open Access
Coronavirus Disease 2019 Lineages in a Minimally Vaccinated Island Population: Genomic Epidemiology of Severe Acute Respiratory Syndrome Coronavirus 2 in Haiti
The Journal of Infectious Diseases·2024Open Access
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Frequent Co-authors

Anne–Mieke Vandamme(16), John A. Lednicky(11), Carla Mavian(11), J. Glenn Morris(10), Massimo Ciccozzi(7), Philippe Lemey(6), Oliver G. Pybus(6), Maha A. Elbadry(6), Sarah K. White(5), Md. Mahbubul Alam(5), Caroline J. Stephenson(5), Taina Telisma(5), Sonese Chavannes(5), Mattia Prosperi(5), Rebecca Gray(5), Susanna L. Lamers(5), Jan Desmyter(5), Julia C. Loeb(4), David J. Nolan(4), Michael S. McGrath(4)