John K. Salmon

D. E. Shaw Research — United States

Computer Science · Physical Sciences

32h-index12.5kcitations86works0.02yr avg
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Research Topics

Parallel Computing and Optimization Techniques(26), Scientific Research and Discoveries(19), Advanced Data Storage Technologies(14), Galaxies: Formation, Evolution, Phenomena(13), Distributed and Parallel Computing Systems(10)

Publications85 total

Anton 3
2021· 110 citedOpen Access
Anton 2: Raising the Bar for Performance and Programmability in a Special-Purpose Molecular Dynamics Supercomputer
2014· 680 cited
Self-Describing File (SDF) Library
2014· 1 citedOpen Access
Extending the Generality of Molecular Dynamics Simulations on a Special-Purpose Machine
2013· 18 cited
Evaluating the Effects of Cutoffs and Treatment of Long-range Electrostatics in Protein Folding Simulations
PLoS ONE·2012· 100 citedOpen Access
Parallel random numbers
2011· 220 cited
Overcoming Communication Latency Barriers in Massively Parallel Scientific Computation
IEEE Micro·2011· 5 cited
Exploiting 162-Nanosecond End-to-End Communication Latency on Anton
2010· 28 cited
Atomic-Level Characterization of the Structural Dynamics of Proteins
Science·2010· 1.9k cited
A 32x32x32, spatially distributed 3D FFT in four microseconds on Anton
2009· 42 cited
Millisecond-scale molecular dynamics simulations on Anton
2009· 293 cited
Millisecond-scale molecular dynamics simulations on Anton
2009· 388 cited
Simulation and embedded software development for Anton, a parallel machine with heterogeneous multicore ASICs
2008· 8 cited
Hierarchical simulation-based verification of Anton, a special-purpose parallel machine
2008· 6 cited
Anton: A specialized ASIC for molecular dynamics
2008· 6 cited
Anton: A specialized ASIC for molecular dynamics
2008· 4 cited
Anton, a special-purpose machine for molecular dynamics simulation
Communications of the ACM·2008· 802 citedOpen Access
High-throughput pairwise point interactions in Anton, a specialized machine for molecular dynamics simulation
Proceedings - International Symposium on High-Performance Computer Architecture/Proceedings·2008· 27 cited
Anton, a special-purpose machine for molecular dynamics simulation
2007· 177 cited
Anton, a special-purpose machine for molecular dynamics simulation
ACM SIGARCH Computer Architecture News·2007· 115 cited
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Frequent Co-authors

Ron O. Dror(17), David E. Shaw(16), Michael S. Warren(16), Mark A. Moraes(12), J.P. Grossman(12), Cliff Young(10), Yibing Shan(9), Michael P. Eastwood(9), John L. Klepeis(9), Joseph A. Bank(9), Douglas J. Ierardi(9), Martin M. Deneroff(8), Jeffrey S. Kuskin(8), Richard H. Larson(8), Brannon Batson(8), Brian Towles(8), K. J. Bowers(7), Kenneth MacKenzie(7), Grégoire Winckelmans(7), Edmond Chow(5)