Edoardo Saccenti

Wageningen University & Research — Netherlands

Biochemistry, Genetics and Molecular Biology · Life Sciences

36h-index6.7kcitations180works3.62yr avg
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Research Topics

Metabolomics and Mass Spectrometry Studies(47), Bioinformatics and Genomic Networks(27), Genomics and Phylogenetic Studies(25), Gene expression and cancer classification(18), Microbial Metabolic Engineering and Bioproduction(17)

Publications180 total

Effects of disease severity on RNA integrity measures in necrotising soft tissue infection as a possible source of research bias: An observational cohort study
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms·2025· 1 citedOpen Access
Heterogeneity of Acute Myeloid Leukemia patients explored through single-cell and single-sample gene regulatory networks
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms·2025Open Access
Plasma and Milk Variables Classify Diet, Dry Period Length, and Lactation Week of Dairy Cows Using a Machine Learning Approach
Metabolites·2025Open Access
MiGenPro: A linked data workflow for phenotype-genotype prediction of microbial traits using machine learning.
2025Open Access
All sparse PCA models are wrong, but some are useful. Part III: Model interpretation
Chemometrics and Intelligent Laboratory Systems·2025Open Access
A Validated Proteomic Signature of Basal-like Triple-Negative Breast Cancer Subtypes Obtained from Publicly Available Data
Cancers·2025· 1 citedOpen Access
Gene expression profile dynamics of earthworms exposed to ZnO and ZnO:Mn nanomaterials
2025Open Access
Recommendations for sample selection, collection and preparation for NMR-based metabolomics studies of blood
Metabolomics·2025· 22 citedOpen Access
Investigating the relationship between dairy dam preconception and gestation characteristics and heifer offspring variables from birth to lactation
Journal of Dairy Science·2025· 1 citedOpen Access
Steering fatty acid composition of yeast microbial oil via genetic modification and bioprocess adjustment
2025Open Access
Ten simple rules to complete successfully a computational MSc thesis project
PLoS Computational Biology·2025Open Access
Integrated Transcriptomic and Metabolomic Ecotoxicity Assessment of Earthworms Exposed to ZnO and Mn-Doped ZnO Nanomaterials
SSRN Electronic Journal·2025Open Access
Predicting uptake and elimination kinetics of chemicals in invertebrates: A technical note on residual variance modeling
Computational Toxicology·2024· 2 citedOpen Access
An integrated proteomics and metabolomics analysis of methylglyoxal-induced neurotoxicity in a human neuroblastoma cell line
npj Science of Food·2024· 9 citedOpen Access
Predicting uptake and elimination kinetics of chemicals in invertebrates: a technical note on residual variance modeling
2024Open Access
Machine learning based analysis of single-cell data reveals evidence of subject-specific single-cell gene expression profiles in acute myeloid leukaemia patients and healthy controls
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms·2024· 3 citedOpen Access
A Simulation Study of the Effects of Additive, Multiplicative, Correlated, and Uncorrelated Errors on Principal Component Analysis
Journal of Chemometrics·2024Open Access
Novel multi-omics deconfounding variational autoencoders can obtain meaningful disease subtyping
Briefings in Bioinformatics·2024· 10 citedOpen Access
Normalization of gene counts affects principal components-based exploratory analysis of RNA-sequencing data
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms·2024· 4 citedOpen Access
Designing interpretable deep learning applications for functional genomics: a quantitative analysis
Briefings in Bioinformatics·2024· 19 citedOpen Access
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Frequent Co-authors

Leonardo Tenori(12), Claudio Luchinat(10), Vítor A. P. Martins dos Santos(9), Age K. Smilde(8), Hauke Smidt(8), María Suárez‐Diez(8), José Camacho(6), Wei Xu(4), A.T.M. van Knegsel(4), B. Kemp(4), Jacques Vervoort(4), Peter J. Schaap(4), Johan A. Westerhuis(3), Ivano Bertini(3), Stefano Nepi(3), François Bergey(3), Klaudyna Borewicz(3), Marieke E. Timmerman(3), Joan E. Edwards(3), Jesse C. J. van Dam(3)