Shane McCarthy

European Bioinformatics Institute — United Kingdom

Biochemistry, Genetics and Molecular Biology · Life Sciences

61h-index147.1kcitations219works4.52yr avg
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Research Topics

Genomics and Phylogenetic Studies(63), Genetic diversity and population structure(26), Genetic Associations and Epidemiology(25), Chromosomal and Genetic Variations(19), Genetic Mapping and Diversity in Plants and Animals(13)

Publications200 total

A trio-binned, haplotype-resolved genome sequence of the zebrafish, Danio rerio Hamilton 1822, SAT strain
Wellcome Open Research·2025Open Access
The genome sequences of Danio albolineatus (Blyth, 1860), Danio choprai Hora, 1928, Danio jaintianensis (Sen, 2007) and Danio tinwini [Kullander & Fang], 2009
Wellcome Open Research·2025Open Access
De novo assembly of complete <i>Plasmodium falciparum</i> isolate genomes using PacBio HiFi sequencing technology
2025Open Access
Patient (pt) relevance of Intermediate Clinical Endpoints (ICEs) in Prostate Cancer (PC): An international cross-sectional online survey
European Urology Open Science·2025Open Access
The <i>Onychomys</i> pangenome reveals the unique molecular adaptations that confer toxin resistance
2025Open Access
Unravelling the thread of Podarcis omics; insights into the genome and transcriptome of the Cretan wall lizard
Genes & Genomics·2025Open Access
Forty new genomes shed light on sexual reproduction and the origin of tetraploidy in Microsporidia
PLoS Biology·2025· 2 citedOpen Access
The genome sequence of the Orange-finned Danio, Danio kyathit Fang, 1998
Wellcome Open Research·2025· 1 citedOpen Access
Genomic and genetic insights into speciation and pigment pattern diversification in <i>Danio</i> fishes
2025· 2 citedOpen Access
The chromosome-level genome sequences of Danio rerio strains AB, Nadia and Cooch Behar
Wellcome Open Research·2025· 1 citedOpen Access
The genome sequence of the Panther Danio, Danio aesculapii Kullander &amp; Fang, 2009
Wellcome Open Research·2025· 1 citedOpen Access
Retrocopy formation and domestication shape genome evolution in sloths and other xenarthrans
2025Open Access
The genomics of convergent adaptation to intertidal gravel beaches in Mediterranean clingfishes
2025Open Access
2455P Prevalence and severity of hot flashes and their association with prostate-specific antigen (PSA) response: results from the initial treatment phase of LIBERTAS, a phase 3 study in metastatic hormone-sensitive prostate cancer (mHSPC)
Annals of Oncology·2025
2515P Efficacy of niraparib and abiraterone acetate plus prednisone in metastatic castration-resistant prostate cancer (mCRPC) with homologous recombination repair (HRR) gene alterations identified by tissue vs plasma assay in MAGNITUDE study final analysis
Annals of Oncology·2025Open Access
Oatk: a de novo assembly tool for complex plant organelle genomes
Genome biology·2025· 40 citedOpen Access
Genomics of Neotropical biodiversity indicators: Two butterfly radiations with rampant chromosomal rearrangements and hybridization
Proceedings of the National Academy of Sciences·2025· 7 citedOpen Access
Project Psyche sample collection to genome assembly publication workflow v1
2025Open Access
A chromosomal reference genome sequence for the malaria mosquito, Anopheles (Nyssorhynchus) aquasalis, Curry, 1932
Wellcome Open Research·2025Open Access
The genome sequence of the zebra danio, Danio rerio (Hamilton, 1822) (Cypriniformes: Danionidae)
Wellcome Open Research·2025· 2 citedOpen Access
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Frequent Co-authors

Richard Durbin(31), Petr Danecek(20), Klaudia Walter(12), Paul Flicek(10), Yasin Memari(10), Yali Xue(10), James Torrance(9), Inês Barroso(9), Chris Tyler‐Smith(9), Jonathan Wood(8), Kerstin Howe(8), Ewan Birney(8), Qasim Ayub(8), Carl A. Anderson(8), Jeffrey C. Barrett(7), Josine L. Min(7), Marcela Uliano‐Silva(7), Marta Futema(7), Jie Huang(7), Yuan Chen(7)