Omid R. Faridani

Garvan Institute of Medical Research — Australia

Biochemistry, Genetics and Molecular Biology · Life Sciences

19h-index11.0kcitations40works0.42yr avg
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Research Topics

Single-cell and spatial transcriptomics(14), MicroRNA in disease regulation(11), Cancer-related molecular mechanisms research(9), RNA Research and Splicing(8), Advanced biosensing and bioanalysis techniques(4)

Publications40 total

Landscape of microRNA and target expression variation and covariation in single mouse embryonic stem cells
Genome Research·2026Open Access
Medlib: A Feature-Rich C/C++ Library for Exact Alignment of Nanopore Sequences Using Multiple Edit Distance
2025· 1 citedOpen Access
Blastocoel fluid RNA predicts pregnancy outcome in assisted reproduction
2025Open Access
Human axillary lymph node T follicular helper (Tfh) and Precursor‐Tfh cells exhibit functional flexibility following seasonal influenza vaccination
Clinical & Translational Immunology·2025· 1 citedOpen Access
Landscape of microRNA and target expression variation and covariation in single mouse embryonic stem cells
2024Open Access
Age prediction from human blood plasma using proteomic and small RNA data: a comparative analysis
Aging·2023· 12 citedOpen Access
Corrigendum: Identification of extremely GC-rich micro RNAs for RT-qPCR data normalization in human plasma
Frontiers in Genetics·2023Open Access
Identification of extremely GC-rich micro RNAs for RT-qPCR data normalization in human plasma
Frontiers in Genetics·2023Open Access
Contribution of mutant HSC clones to immature and mature cells in MDS and CMML, and variations with AZA therapy
Blood·2022· 13 citedOpen Access
Clinical Response to Azacytidine (AZA) Is Associated with Increased Contribution from Mutated Blood Progenitors: Insights from Single Cell Genotyping of Matched Stem/Progenitor and Mature Blood Cells from MDS/CMML Patients Pre- and Post-AZA Treatment
Blood·2022Open Access
P-420 Dysregulated microRNAs in uterine fluid from women with recurrent implantation failure are linked to endometrial receptivity and implantation
Human Reproduction·2022· 1 citedOpen Access
Uterine fluid microRNAs are dysregulated in women with recurrent implantation failure
Human Reproduction·2022· 56 citedOpen Access
Single cell genotyping of matched bone marrow and peripheral blood cells in treatment naive and AZA-treated MDS and CMML
2022Open Access
Trophoblast derived extracellular vesicles specifically alter the transcriptome of endometrial cells and may constitute a critical component of embryo-maternal communication
Reproductive Biology and Endocrinology·2021· 52 citedOpen Access
Small noncoding RNA profiling across cellular and biofluid compartments and their implications for multiple sclerosis immunopathology
Proceedings of the National Academy of Sciences·2021· 26 citedOpen Access
Profiling of small non-coding RNAs across cellular and biofluid compartments: implications for multiple sclerosis immunopathology
2020· 1 citedOpen Access
Single-cell RNA counting at allele and isoform resolution using Smart-seq3
Nature Biotechnology·2020· 694 cited
Smart-seq3 Protocol v3
2020· 8 citedOpen Access
Author Correction: Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
Nature Biotechnology·2020· 12 citedOpen Access
Smart-seq3 Protocol v2
2020· 4 citedOpen Access
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Frequent Co-authors

Rickard Sandberg(18), Michael Hagemann-Jensen(10), Daniel Ramsköld(7), Ping Chen(6), Anton J. M. Larsson(6), Christoph Ziegenhain(5), Gert‐Jan Hendriks(5), Åsa K. Björklund(4), Gösta Winberg(4), Sven Sagasser(4), Liam Good(4), Nageswara Rao Boggavarapu(4), Simone Picelli(3), Caroline Frisendahl(3), Kristina Gemzell‐Danielsson(3), Annatina Schnegg‐Kaufmann(3), Julie A.I. Thoms(3), Golam Sarower Bhuyan(3), Henry R. Hampton(3), Lachlin Vaughan(3)