Tim-Oliver Buchholz

Friedrich Miescher Institute — Switzerland

Biochemistry, Genetics and Molecular Biology · Life Sciences

9h-index2.3kcitations41works0.32yr avg
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Research Topics

Cell Image Analysis Techniques(29), Image Processing Techniques and Applications(8), Advanced Electron Microscopy Techniques and Applications(5), Advanced Fluorescence Microscopy Techniques(3), Image and Signal Denoising Methods(3)

Publications41 total

Decoding how maternal signals regulate trophoblast invasion during human placental development using a high-content imaging screen
Placenta·2025
The eutherian-specific histone H3.4 promotes germ cell development and reproductive fitness
2025Open Access
SciJava Ops: an improved algorithms framework for Fiji and beyond
Frontiers in Bioinformatics·2024Open Access
SciJava Ops: An Improved Algorithms Framework for Fiji and Beyond
arXiv (Cornell University)·2024· 1 citedOpen Access
Test dataset for MoBIE Viewer
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Test dataset for MoBIE Viewer
2023Open Access
N2V2 - Fixing Noise2Void Checkerboard Artifacts with Modified Sampling Strategies and a Tweaked Network Architecture
Lecture notes in computer science·2023· 17 cited
N2V2 -- Fixing Noise2Void Checkerboard Artifacts with Modified Sampling Strategies and a Tweaked Network Architecture
arXiv (Cornell University)·2022· 3 citedOpen Access
Conversion of anterograde into retrograde trains is an intrinsic property of intraflagellar transport
Current Biology·2022· 21 citedOpen Access
Total internal reflection time series for "Conversion of anterograde into retrograde trains is an intrinsic property of intraflagellar transport"
Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
Fourier Image Transformer
2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW)·2022· 15 cited
ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation
Journal of Structural Biology·2022· 43 citedOpen Access
Democratising deep learning for microscopy with ZeroCostDL4Mic
Nature Communications·2021· 535 citedOpen Access
Fourier Image Transformer
arXiv (Cornell University)·2021Open Access
Intraflagellar transport trains can turn around without the ciliary tip complex
2021· 9 cited
DSB (noise 20) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Zenodo (CERN European Organization for Nuclear Research)·2020Open Access
Flywing (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Zenodo (CERN European Organization for Nuclear Research)·2020Open Access
Mouse (noise 0) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
2020Open Access
Mouse (noise 20) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Zenodo (CERN European Organization for Nuclear Research)·2020Open Access
Mouse (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Zenodo (CERN European Organization for Nuclear Research)·2020Open Access
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Frequent Co-authors

Florian Jug(35), Alexander Krull(24), Mangal Prakash(20), Deborah Schmidt(18), Gaia Pigino(7), Mareike A. Jordan(3), Adrian P. Nievergelt(3), Ilia Zykov(3), Dennis R. Diener(3), Markus Delling(3), Stefan Diez(3), Luděk Štěpánek(3), Sabine Reither(3), Aditya Chhatre(2), Eva Höck(2), Anselm Brachmann(2), Alexander Freytag(2), Gabriel J. Selzer(2), Curtis Rueden(2), Mark Hiner(2)