Daisie Huang

Biochemistry, Genetics and Molecular Biology · Life Sciences

6h-index791citations24works0.02yr avg
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Research Topics

Genomics and Phylogenetic Studies(6), Genetic diversity and population structure(4), Scientific Computing and Data Management(3), Botany, Ecology, and Taxonomy Studies(3), Botanical Research and Chemistry(3)

Publications24 total

juliema/aTRAM: aTRAM Stitcher
Zenodo (CERN European Organization for Nuclear Research)·2019Open Access
swcarpentry/git-novice-es: Git Novice in Spanish v2018.04.3
Figshare·2018Open Access
Homogenization of Populations in the Wildflower, Texas Bluebonnet (Lupinus texensis)
Journal of Heredity·2017· 7 citedOpen Access
Phylogenomics from Whole Genome Sequences Using aTRAM
Systematic Biology·2016· 79 citedOpen Access
phageParser: Pre-alpha release
Zenodo (CERN European Organization for Nuclear Research)·2015Open Access
plann: APPS publication version
Zenodo (CERN European Organization for Nuclear Research)·2015Open Access
Plann: A command‐line application for annotating plastome sequences
Applications in Plant Sciences·2015· 453 citedOpen Access
phylogenomics: Version of scripts used for New Phytologist publication
Zenodo (CERN European Organization for Nuclear Research)·2015Open Access
Software Carpentry: Version Control With Git
Figshare·2015Open Access
aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data
BMC Bioinformatics·2015· 78 citedOpen Access
phylogenomics: Plann release
Zenodo (CERN European Organization for Nuclear Research)·2015Open Access
How Git works: a cartoon
Figshare·2015Open Access
Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, <i><scp>P</scp>opulus balsamifera</i> and <i><scp>P</scp>. trichocarpa</i> (<scp>S</scp>alicaceae)
New Phytologist·2014· 127 citedOpen Access
Move config.txt path for brew
Zenodo (CERN European Organization for Nuclear Research)·2014Open Access
v1.02-brew
Zenodo (CERN European Organization for Nuclear Research)·2014Open Access
v1.01-doi
2014· 1 citedOpen Access
Phylogenomic exploration with aTRAM: slides only
Figshare·2014Open Access
Phylogenetic and population genetic investigations into the systematics of the Lupinus albifrons complex (Fabaceae) and the perennial lupines of western North America
Figshare·2014Open Access
Phylogenomic exploration with aTRAM: slides only
Figshare·2014Open Access
Software Engineering as Instrumentation for the Long Tail of Scientific Software
arXiv (Cornell University)·2013· 2 citedOpen Access
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Frequent Co-authors

Quentin Cronk(5), juliema(4), Julie M. Allen(3), Kevin P. Johnson(2), Elizabeth Friar(2), Hilmar Lapp(2), Madeleine Bonsma(2), Jonah Duckles(2), Charles A. Hefer(1), Natalia Kolosova(1), Carl J. Douglas(1), Bret M. Boyd(1), Nam Nguyen(1), Pranjal Vachaspati(1), Tandy Warnow(1), Patrick G. S. Grady(1), Kayce C. Bell(1), Lawrence Mugisha(1), Barry R. Pittendrigh(1), María Soledad Leonardi(1)