Serdal Kırmızıaltın

New York University Abu Dhabi — AE

Biochemistry, Genetics and Molecular Biology · Life Sciences

27h-index2.2kcitations115works6.62yr avg
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Research Topics

DNA and Nucleic Acid Chemistry(40), RNA and protein synthesis mechanisms(38), Protein Structure and Dynamics(15), RNA Research and Splicing(13), RNA modifications and cancer(12)

Publications115 total

Cat_Wiz: a stereochemistry-guided toolkit for locating, diagnosing, and annotating Mg2+ ions in RNA structures
Nucleic Acids Research·2026· 1 citedOpen Access
BPS2026 – Ion preferences in RNA structure: Stabilization of G:U mismatches by potassium
Biophysical Journal·2026
Machine learning highlights chemistry as the key factor in metal–organic frameworks for atmospheric water harvesting
Molecular Systems Design & Engineering·2025
Author response for "Machine Learning Highlights Chemistry as the Key Factor in Metal-Organic Frameworks for Atmospheric Water Harvesting"
2025
Cat_Wiz: A stereochemistry-guided toolkit for locating, diagnosing and annotating Mg <sup>2+</sup> ions in RNA structures
2025Open Access
Accurate Prediction of Mechanical Property of Organic Crystals Using Molecular Dynamics-Based Nanoindentation Simulations
Journal of the American Chemical Society·2025· 2 citedOpen Access
Protein Crowders Remodel RNA Electrostatics, Hydration, and Dynamics: A Challenge to Steric Crowding Models
2025Open Access
Author response for "Machine Learning Highlights Chemistry as the Key Factor in Metal-Organic Frameworks for Atmospheric Water Harvesting"
2025
Investigating the Mechanism of Ion Concentration Polarization Within Nanofluidic Hydrogel Membranes: Experiment and Simulation (Adv. Mater. Interfaces 15/2025)
Advanced Materials Interfaces·2025Open Access
Designing Reversible Photoswitching Azobenzene-Modified Nucleotide for Controlling Biological Function
Journal of the American Chemical Society·2025· 1 citedOpen Access
Designing reversible photoswitching azobenzene modified nucleotide for controlling biological function
2025Open Access
Balancing Pore Accessibility and Hydrophobicity for Enhanced Perfluorooctanoic Acid Removal: A Case Study on NU-1000
Chemistry of Materials·2025· 3 citedOpen Access
HB-CUFIX: Force field for accurate RNA simulations
The Journal of Chemical Physics·2025· 3 cited
Investigating the Mechanism of Ion Concentration Polarization Within Nanofluidic Hydrogel Membranes: Experiment and Simulation
Advanced Materials Interfaces·2025· 1 citedOpen Access
Designing reversible photoswitching azobenzene modified nucleotide for controlling biological function
2025
Cationic covalent organic framework for the fluorescent sensing and cooperative adsorption of perfluorooctanoic acid
Nature Communications·2024· 89 citedOpen Access
Electrocatalytic Water Splitting in Isoindigo‐Based Covalent Organic Frameworks
Angewandte Chemie International Edition·2024· 14 cited
Electrocatalytic Water Splitting in Isoindigo‐Based Covalent Organic Frameworks
Angewandte Chemie·2024· 5 cited
Principles of ion binding to RNA inferred from the analysis of a 1.55 Å resolution bacterial ribosome structure – Part I: Mg2+
Nucleic Acids Research·2024· 6 citedOpen Access
Sequence-dependent conformational preferences of disordered single-stranded RNA
Cell Reports Physical Science·2024· 3 citedOpen Access
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Frequent Co-authors

Ali Trabolsi(10), Ron Elber(9), Sudhir Kumar Sharma(8), Ramesh Jagannathan(8), Mark A. Olson(6), Lois Pollack(6), Dmitrii E. Makarov(6), Weiwei He(6), Dinesh Shetty(5), Tina Škorjanc(5), Felipe Gándara(5), Nawavi Naleem(5), Sabu Varghese(5), Gobinda Das(5), Thirumurugan Prakasam(5), Kenneth A. Johnson(4), Nour Alkhatib(4), Farah Benyettou(4), Jésus Raya(4), Anja Henning‐Knechtel(4)