Benjamin P. Berman

Hebrew University of Jerusalem — Israel

Biochemistry, Genetics and Molecular Biology · Life Sciences

67h-index41.8kcitations270works5.62yr avg
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Research Topics

Epigenetics and DNA Methylation(75), Cancer Genomics and Diagnostics(53), RNA modifications and cancer(47), Genomics and Chromatin Dynamics(37), Cancer-related gene regulation(25)

Publications227 total

Cytokine-induced Chromatin Accessibility in Whole Blood Neutrophils Links to Sepsis Transcriptional States
2026
Profiling Cell-free DNA to Better Understand Clinical Pathologies, Immune Response and Disease Progression
American Journal of Respiratory and Critical Care Medicine·2025
Chromatin changes associated with neutrophil extracellular trap formation in whole blood reflect complex immune signaling
Frontiers in Immunology·2025· 2 citedOpen Access
Chromatin Changes Associated with Neutrophil Extracellular Trap (NET) Formation in Whole Blood Reflect Complex Immune Signaling
2025Open Access
Understanding the complex chromatin dynamics in primary human neutrophils during PMA-induced NET formation
Frontiers in Immunology·2024· 11 citedOpen Access
Author Correction: CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes
Genome biology·2024Open Access
CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes
Genome biology·2024· 9 citedOpen Access
Understanding Complex Chromatin Dynamics of Primary Human Neutrophils During PMA Induced NETosis
2024Open Access
Long-read sequencing identifies aberrant fragmentation patterns linked to elevated cell-free DNA levels in cancer
2024· 1 citedOpen Access
Abstract 2428: Novel ctDNA technology for early cancer detection by immunoprecipitation of tumor associated ctDNA fragments and analysis by qPCR
Cancer Research·2024
BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies
Nucleic Acids Research·2024· 39 citedOpen Access
Understanding Netosis Priming and Induction through Nucleosome Changes and Real-Time Monitoring in Isolated Neutrophils and in an Ex-Vivo Model
Blood·2023· 2 cited
Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation
Genome biology·2023· 17 citedOpen Access
Multi-cell type deconvolution using a probabilistic model for single-molecule DNA methylation haplotypes
2023· 5 citedOpen Access
Supplemental Table S5 from Genomic and Epigenomic Heterogeneity of Hepatocellular Carcinoma
2023Open Access
Supplementary Table 1 from Opposing Effects of Runx2 and Estradiol on Breast Cancer Cell Proliferation: <i>In Vitro</i> Identification of Reciprocally Regulated Gene Signature Related to Clinical Letrozole Responsiveness
2023Open Access
Supplementary Information from Genomic and Epigenomic Heterogeneity of Hepatocellular Carcinoma
2023Open Access
Supplementary Table 6 from Opposing Effects of Runx2 and Estradiol on Breast Cancer Cell Proliferation: <i>In Vitro</i> Identification of Reciprocally Regulated Gene Signature Related to Clinical Letrozole Responsiveness
2023Open Access
Supplemental Tables S1-4 from Genomic and Epigenomic Heterogeneity of Hepatocellular Carcinoma
2023Open Access
Supplementary Fig.1-11 from Genomic and Epigenomic Heterogeneity of Hepatocellular Carcinoma
2023Open Access
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Frequent Co-authors

Peter W. Laird(9), De‐Chen Lin(9), H. Phillip Koeffler(8), Anand Mayakonda(7), S Celniker(6), Tiago C. Silva(6), Peggy Farnham(6), Lijing Yao(6), Ling‐Wen Ding(6), Peter J. Bailey(5), Stephen B. Baylin(5), Houtan Noushmehr(5), Hui Shen(5), Gerald M. Rubin(5), Gerhard A. Coetzee(5), Huy Q. Dinh(5), Kenneth Aldape(4), Christopher C. Benz(4), Daniel J. Weisenberger(4), Katherine A. Hoadley(4)