Nathalie Gaudreault

Allen Institute for Cell Science — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

9h-index489citations35works0.52yr avg
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Research Topics

Cell Image Analysis Techniques(26), Single-cell and spatial transcriptomics(8), Advanced Fluorescence Microscopy Techniques(7), Research Data Management Practices(6), Scientific Computing and Data Management(5)

Publications35 total

Better reporting is better science: Community-defined minimal reporting requirements for light microscopy
The Journal of Cell Biology·2026
Interpretable representation learning for 3D multi-piece intracellular structures using point clouds
Nature Methods·2025· 4 citedOpen Access
BPS2025 - Interpretable representation learning for 3D multi-piece intracellular structures in human induced pluripotent stem cells using point clouds
Biophysical Journal·2025
BPS2025 - Interpretable representation learning for 3D multi-piece intracellular structures in human induced pluripotent stem cells using point clouds
Biophysical Journal·2025
2. Sample Preparation - An Easy-to-Prepare Sample Slide v1
2024Open Access
3. Data Generation - Systems with an Area Detector v1
2024Open Access
1. Introduction - Background and Aims v1
2024Open Access
Characterization of the Photon Conversion Factor, Noise, and Dynamic Range of Light Microscope Detection Systems v1
2024Open Access
Interpretable representation learning for 3D multi-piece intracellular structures using point clouds
2024Open Access
Harmonizing the Generation and Pre-publication Stewardship of FAIR Image Data
PubMed·2024· 2 citedOpen Access
Illumination Power, Stability, and Linearity Measurements for Confocal, Widefield and Multiphoton Microscopes v1
2024Open Access
Automated human induced pluripotent stem cell culture and sample preparation for 3D live-cell microscopy
Nature Protocols·2023· 15 cited
Community-developed checklists for publishing images and image analyses.
PubMed·2023· 5 citedOpen Access
Community-developed checklists for publishing images and image analyses
Nature Methods·2023· 71 citedOpen Access
Reporting reproducible imaging protocols
STAR Protocols·2023· 8 citedOpen Access
Community-developed checklists for publishing images and image analysis
arXiv (Cornell University)·2023· 6 citedOpen Access
Integrated intracellular organization and its variations in human iPS cells
Nature·2023· 130 citedOpen Access
Results of community surveys organized by the members of the BioImaging North America – Quality Control and Data Management Working Group to understand the microscopy reporting and reproducibility needs of the bioimaging community
Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
Illumination Power, Stability, and Linearity Measurements for Confocal and Widefield Microscopes v2
2022· 4 citedOpen Access
A deep generative model of 3D single-cell organization
PLoS Computational Biology·2022· 40 citedOpen Access
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Frequent Co-authors

Roland Nitschke(18), David Grünwald(17), Orestis Faklaris(16), Ulrike Boehm(14), Glyn Nelson(14), Mathias Hammer(12), Judith Lacoste(12), Alison J. North(12), Caterina Strambio‐De‐Castillia(12), Alex Laude(11), Julie A. Theriot(10), Susanne M. Rafelski(10), Britta Schroth‐Diez(10), Jaime A. Pimentel(10), James J. Chambers(9), Damir Sudar(9), Claire M. Brown(9), Matheus P. Viana(8), Calysta Yan(8), Antoine Borensztejn(8)