Chongle Pan

Guangzhou Urban Planning Survey & Design Institute — China

Environmental Science · Physical Sciences

42h-index5.6kcitations182works4.52yr avg
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Research Topics

Microbial Community Ecology and Physiology(47), Genomics and Phylogenetic Studies(38), Advanced Proteomics Techniques and Applications(25), Methane Hydrates and Related Phenomena(22), Metabolomics and Mass Spectrometry Studies(19)

Publications180 total

AI-Enabled Personalized Smoking Cessation Intervention With the Aipaca Chatbot: Mixed Methods Feasibility Study
JMIR Formative Research·2025· 1 citedOpen Access
Benchmarking interpretability of deep learning for predictive genomics: Recall, precision, and variability of feature attribution
PLoS Computational Biology·2025Open Access
STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies
Nature Microbiology·2025· 2 cited
Label-free viability assessment of <i>ex vivo</i> mouse kidneys for transplant applications using dynamic optical coherence tomography
Biomedical Optics Express·2025Open Access
Luedeking-Piret regression for multi-step-ahead forecasting and clone selection in monoclonal antibodies biomanufacturing
Communications Engineering·2025Open Access
Aerith: Visualization and Annotation of Isotopic Enrichment Patterns of Peptides and Metabolites with Stable Isotope Labeling from Proteomics and Metabolomics
Analytical Chemistry·2025Open Access
Enhancing peptide identification in metaproteomics through curriculum learning in deep learning
Nature Communications·2025Open Access
Integration of nested cross-validation, automated hyperparameter optimization, high-performance computing to reduce and quantify the variance of test performance estimation of deep learning models
Computer Methods and Programs in Biomedicine·2025· 2 citedOpen Access
Real-Time Viability Assessment of Ex Vivo Mouse Kidneys for Transplant Applications Using Dynamic Optical Coherence Tomography
2025Open Access
Deep Learning for Autonomous Surgical Guidance Using 3‐Dimensional Images From Forward‐Viewing Endoscopic Optical Coherence Tomography
Journal of Biophotonics·2025· 1 citedOpen Access
Unified modeling language code generation from diagram images using multimodal large language models
Machine Learning with Applications·2025· 5 citedOpen Access
Modest functional diversity decline and pronounced composition shifts of microbial communities in a mixed waste-contaminated aquifer
Microbiome·2025· 3 citedOpen Access
Understanding the deterioration mechanism of Xiashu loess in dry-wet cycles
Bulletin of Engineering Geology and the Environment·2025· 2 cited
Comprehensive Evaluation of Human Donor Liver Viability with Polarization-Sensitive Optical Coherence Tomography
2025Open Access
Intelligent platform for needle-based intervention (NBI) guidance (Conference Presentation)
2025
Integration of nested cross-validation, automated hyperparameter optimization, high-performance computing to reduce and quantify the variance of test performance estimation of deep learning models
arXiv (Cornell University)·2025Open Access
AI-Enabled Personalized Smoking Cessation Intervention With the Aipaca Chatbot: Mixed Methods Feasibility Study (Preprint)
2025Open Access
Octascope: A Lightweight Pre-Trained Model for Optical Coherence Tomography
IEEE Access·2025Open Access
Higher-order microbial interactions revealed by comparative metabolic modeling of synthetic communities with varying species composition
ISME Communications·2025Open Access
Absence of biofilm adhesin proteins changes surface attachment and cell strategy for <i>Desulfovibrio vulgaris</i> Hildenborough
Journal of Bacteriology·2024· 1 citedOpen Access
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Frequent Co-authors

Robert L. Hettich(29), Jillian F. Banfield(16), Gregory B. Hurst(10), Nagiza F. Samatova(9), Nathan C. VerBerkmoes(8), Zhou Li(7), Ryan Mueller(7), Brian C. Thomas(5), Xavier Mayali(5), Manesh Shah(4), Qiuming Yao(4), David L. Tabb(4), Yingfeng Wang(4), Guruprasad Kora(4), Tae-Hyuk Ahn(4), Dale A. Pelletier(4), Samuel Bryson(4), Alison R. Erickson(3), Zhou Li(3), Karuna Chourey(3)