Barry Demchak

Biochemistry, Genetics and Molecular Biology · Life Sciences

21h-index5.1kcitations63works0.02yr avg
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Research Topics

Bioinformatics and Genomic Networks(37), Scientific Computing and Data Management(22), Gene expression and cancer classification(15), Genetics, Bioinformatics, and Biomedical Research(12), Service-Oriented Architecture and Web Services(9)

Publications63 total

Supplementary Video S1 from NDEx 2.0: A Clearinghouse for Research on Cancer Pathways
2024Open Access
Data from NDEx 2.0: A Clearinghouse for Research on Cancer Pathways
2024Open Access
Supplementary Video S1 from NDEx 2.0: A Clearinghouse for Research on Cancer Pathways
2024Open Access
Supplementary Video S1 from NDEx 2.0: A Clearinghouse for Research on Cancer Pathways
2024Open Access
Supplementary Video S1 from NDEx 2.0: A Clearinghouse for Research on Cancer Pathways
2024Open Access
Data from NDEx 2.0: A Clearinghouse for Research on Cancer Pathways
2024Open Access
Data from NDEx 2.0: A Clearinghouse for Research on Cancer Pathways
2024Open Access
RCy3: Network biology using Cytoscape from within R
F1000Research·2019· 198 citedOpen Access
RCy3: Network biology using Cytoscape from within R
F1000Research·2019· 178 citedOpen Access
RCy3: Network biology using Cytoscape from within R
F1000Research·2019· 115 citedOpen Access
RCy3: Network Biology using Cytoscape from within R
2019· 12 citedOpen Access
Cytoscape Automation: empowering workflow-based network analysis
Genome biology·2019· 1.7k citedOpen Access
DDOT: A Swiss Army Knife for Investigating Data-Driven Biological Ontologies
Cell Systems·2019· 24 citedOpen Access
Copycat Layout: Network layout alignment via Cytoscape Automation
F1000Research·2018· 2 citedOpen Access
aMatReader: Importing adjacency matrices via Cytoscape Automation
F1000Research·2018· 7 citedOpen Access
Theory and Application of Network Biology Toward Precision Medicine
Journal of Molecular Biology·2018· 7 cited
Copycat Layout: Network layout alignment via Cytoscape Automation
F1000Research·2018· 2 citedOpen Access
aMatReader: Importing adjacency matrices via Cytoscape Automation
F1000Research·2018· 7 citedOpen Access
The Cytoscape Automation app article collection
F1000Research·2018· 29 citedOpen Access
Using deep learning to model the hierarchical structure and function of a cell
Nature Methods·2018· 432 citedOpen Access
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Frequent Co-authors

Trey Ideker(16), Keiichiro Ono(11), John H. Morris(8), Alexander R. Pico(7), Ingolf H. Krüger(7), David Otasek(6), Dexter Pratt(6), Emilia Farcas(5), Massimiliano Menarini(5), Brett Settle(5), Michael Yu(4), Eric Sage(4), Tim Hull(4), Michael Reich(4), Ted Liefeld(4), Jill P. Mesirov(4), Julia Gustavsen(4), Shraddha Pai(4), Ruth Isserlin(4), James Robinson(4)