Joseph R. Ecker

Salk Institute for Biological Studies — United States

Agricultural and Biological Sciences · Life Sciences

168h-index129.3kcitations533works7.72yr avg
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Research Topics

Plant Molecular Biology Research(146), Epigenetics and DNA Methylation(99), Single-cell and spatial transcriptomics(75), Plant Stress Responses and Tolerance(56), Genomics and Chromatin Dynamics(56)

Publications527 total

An Integrated Single-Cell and Epigenomic Resource for Comparative Analysis of the Basal Ganglia
2026· 1 citedOpen Access
Author Correction: An ABA-increased interaction of the PYL6 ABA receptor with MYC2 Transcription Factor: A putative link of ABA and JA signalling
Scientific Reports·2026Open Access
Alternative oxidase and ethylene form a positive feed-forward loop in mitochondrial retrograde signalling
Plant Communications·2026Open Access
UC Irvine’s Brain Initiative Cell Atlas Network (BICAN) Brain Procurement Program for the Center for Multiomic Human Brain Cell Atlas Project
2025Open Access
Circuit specific specialization of human basal ganglia astrocytes
2025· 1 citedOpen Access
Multiscale Spatial Transcriptomic Atlas of Human Basal Ganglia Cell-Type and Cellular Community Organization
2025· 2 citedOpen Access
Brain Region-Specific Epigenomic Reorganization and Altered Cell States in Alzheimer’s Disease
2025Open Access
Innate immune molecular landscape following controlled human influenza virus infection
Cell Reports·2025· 1 citedOpen Access
Dissecting epigenome dynamics in human immune cells upon viral and chemical exposure by multimodal single-cell profiling
2025· 1 citedOpen Access
Cell-type-specific enrichment of somatic aneuploidy in the mammalian brain
Neuron·2025· 2 citedOpen Access
Drought recovery in plants triggers a cell-state-specific immune activation
Nature Communications·2025· 7 citedOpen Access
A single-cell, spatial transcriptomic atlas of the Arabidopsis life cycle
Nature Plants·2025· 18 citedOpen Access
Single-cell polygenic risk scores dissect cellular and molecular heterogeneity of complex human diseases
Nature Biotechnology·2025· 5 citedOpen Access
Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex
Cell Genomics·2025· 12 citedOpen Access
Maternal Immune Activation Disrupts Epigenomic and Functional Maturation of Cortical Excitatory Neurons
2025Open Access
DNA Methylation Dynamics of Dose-dependent Acute Exercise, Training Adaptation, and Detraining
2025Open Access
Single-Cell Epigenomics Uncovers Heterochromatin Instability and Transcription Factor Dysfunction during Mouse Brain Aging
2025· 2 citedOpen Access
Cell-type-specific transposable element demethylation and TAD remodeling in the aging mouse brain
2025· 1 citedOpen Access
Human Body Single-Cell Atlas of 3D Genome Organization and DNA Methylation
2025· 9 citedOpen Access
Stress drives plasticity in leaf maturation transcriptional dynamics
2025· 1 citedOpen Access
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Frequent Co-authors

Ryan Lister(11), Huaming Chen(11), Joseph R. Nery(10), Bing Ren(9), José M. Alonso(9), James A. Thomson(7), Paul Shinn(7), Ronan C. O’Malley(7), R. David Hawkins(6), Mark A. Urich(6), Matthew D. Schultz(5), Detlef Weigel(5), Mattia Pelizzola(5), Jessica Antosiewicz‐Bourget(5), Nisha Rajagopal(4), B Bernstein(4), Charles C. Berry(4), Zhen Ye(4), Ron Stewart(4), Mary Galli(4)