Ryan L. Clark

University of Wisconsin–Madison — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

13h-index875citations26works0.02yr avg
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Research Topics

Gut microbiota and health(12), Microbial Metabolic Engineering and Bioproduction(6), Algal biology and biofuel production(5), Photosynthetic Processes and Mechanisms(4), Biofuel production and bioconversion(3)

Publications26 total

Control points for design of taxonomic composition in synthetic human gut communities
Cell Systems·2023· 15 citedOpen Access
Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics
eLife·2022· 63 citedOpen Access
Under‐Oil Autonomously Regulated Oxygen Microenvironments: A Goldilocks Principle‐Based Approach for Microscale Cell Culture (Adv. Sci. 10/2022)
Advanced Science·2022Open Access
Model-guided design of the diversity of a synthetic human gut community
2022· 10 citedOpen Access
Author response: Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics
2022· 2 citedOpen Access
Under‐Oil Autonomously Regulated Oxygen Microenvironments: A Goldilocks Principle‐Based Approach for Microscale Cell Culture
Advanced Science·2022· 25 citedOpen Access
Negative interactions determine <i>Clostridioides difficile</i> growth in synthetic human gut communities
Molecular Systems Biology·2021· 55 citedOpen Access
Deep Learning Enables Design of Multifunctional Synthetic Human Gut Microbiome Dynamics
2021· 12 citedOpen Access
Design of synthetic human gut microbiome assembly and butyrate production
Nature Communications·2021· 186 citedOpen Access
Illumina Sequencing Data for "Design of synthetic human gut microbiome assembly and butyrate production"
2021· 1 citedOpen Access
Illumina Sequencing Data for "Design of synthetic human gut microbiome assembly and butyrate production"
Zenodo (CERN European Organization for Nuclear Research)·2021Open Access
Species richness determines <i>C. difficile</i> invasion outcome in synthetic human gut communities
2021· 4 citedOpen Access
Design of synthetic human gut microbiome assembly and function
2020· 8 citedOpen Access
Microbial Interaction Network Inference in Microfluidic Droplets
Cell Systems·2019· 135 citedOpen Access
Rapid microbial interaction network inference in microfluidic droplets
2019· 6 citedOpen Access
Light-optimized growth of cyanobacterial cultures: Growth phases and productivity of biomass and secreted molecules in light-limited batch growth
Metabolic Engineering·2018· 64 citedOpen Access
High-CO<sub>2</sub> Requirement as a Mechanism for the Containment of Genetically Modified Cyanobacteria
ACS Synthetic Biology·2018· 31 citedOpen Access
Engineering photosynthetic production of L-lysine
Metabolic Engineering·2017· 50 citedOpen Access
A metabolic pathway for catabolizing levulinic acid in bacteria
Nature Microbiology·2017· 113 citedOpen Access
Construction and Operation of an Affordable Laboratory Photobioreactor System for Simultaneous Cultivation of up to 12 Independent 1 L Cyanobacterial Cultures
2017· 3 citedOpen Access
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Frequent Co-authors

Ophelia S. Venturelli(13), Brian F. Pfleger(9), Bryce Connors(6), Thatcher W. Root(5), Jaron Thompson(5), Susan Hromada(4), Daniel Amador‐Noguez(4), Laura L. McGinley(3), Mayank Baranwal(3), Zeyu Sun(3), Alfred O. Hero(3), David Stevenson(2), Joshua J. Hamilton(2), Ryan H. Hsu(2), Jin Tan(2), Philip A. Romero(2), Andrew L. Markley(2), Travis C. Korosh(2), Yili Qian(2), Lauren Watson(2)