John P. Dekker

National Institute of Allergy and Infectious Diseases — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

37h-index5.8kcitations136works5.72yr avg
OpenAlex↗ORCID↗Google Scholar↗Lab page↗

Accepting Students?

No reports yet. Know if this professor is taking students?

Research Topics

Antibiotic Resistance in Bacteria(43), Bacterial Identification and Susceptibility Testing(35), Genomics and Phylogenetic Studies(23), Antibiotic Use and Resistance(18), Vibrio bacteria research studies(14)

Publications134 total

Pre- and peri-hematopoietic cell transplant management of disseminated non-Helicobacter pylori Helicobacter infection in X-linked agammaglobulinemia: Case series and literature review
Clinical Immunology·2026Open Access
Genomic determinants of antibiotic resistance for Helicobacter pylori treatment: a retrospective phenotypic and genotypic observational study.
Open Access CRIS of the University of Bern·2026Open Access
Genomic determinants of antibiotic resistance for Helicobacter pylori treatment: a retrospective phenotypic and genotypic observational study
The Lancet Microbe·2025Open Access
Global diversity of integrating conjugative elements (ICEs) in <i>Helicobacter pylori</i> and their influence on genome architecture
2025Open Access
An open-source nanopore-only sequencing workflow for analysis of clonal outbreaks delivers short-read level accuracy
Journal of Clinical Microbiology·2025· 5 citedOpen Access
Transcriptional diversification in a human-adapting zoonotic pathogen drives niche-specific evolution
Nature Communications·2025· 2 citedOpen Access
Bactericidal antibiotic treatment induces damaging inflammation via TLR9 sensing of bacterial DNA
Nature Communications·2024· 11 citedOpen Access
Adjunctive linezolid versus clindamycin for toxin inhibition in β-lactam-treated patients with invasive group A streptococcal infections in 195 US hospitals from 2016 to 2021: a retrospective cohort study with target trial emulation
The Lancet Infectious Diseases·2024· 20 citedOpen Access
Efflux pump-mediated resistance to new beta lactam antibiotics in multidrug-resistant gram-negative bacteria
Communications Medicine·2024· 39 citedOpen Access
Bacterial Genomics for National Antimicrobial Resistance Surveillance in Cambodia
The Journal of Infectious Diseases·2024· 3 citedOpen Access
Whole-genome sequence of <i>Mucor velutinosus</i> NIH1002, a strain associated with disseminated disease
Microbiology Resource Announcements·2024· 1 citedOpen Access
Regional centromere configuration in the fungal pathogens of the <i>Pneumocystis</i> genus
mBio·2024· 4 citedOpen Access
Genomic Determinants of Antibiotic Resistance for Helicobacter Pylori Treatment
SSRN Electronic Journal·2024· 1 citedOpen Access
Bacterial Genomics for National Antimicrobial Resistance Surveillance in Cambodia
SSRN Electronic Journal·2024Open Access
Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Within-Host Evolution of Bacterial Pathogens in Acute and Chronic Infection
Annual Review of Pathology Mechanisms of Disease·2023· 24 citedOpen Access
<i>Escherichia</i> and <i>Shigella</i>
ClinMicroNow·2023
<i>Salmonella</i>
ClinMicroNow·2023
<i>Escherichia</i> and <i>Shigella</i>
ClinMicroNow·2023
page 1 of 7Next →

Frequent Co-authors

Karen M. Frank(14), Anna F. Lau(10), Sameer S. Kadri(9), Tara N. Palmore(9), Robert L. Danner(8), Sean Conlan(7), Julia A. Segre(7), Yi Ling Lai(6), Chanu Rhee(6), Michael Klompas(6), Anthony F. Suffredini(6), Sarah Warner(6), Jeffrey R. Strich(6), Ahmed Babiker(6), Rebecca A. Weingarten(6), Pavel P. Khil(6), Steven K. Drake(6), Emily Ricotta(5), John H. Powers(5), David K. Henderson(5)