Jonathan Crabtree

University of Maryland, Baltimore — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

43h-index18.2kcitations92works14.02yr avg
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Research Topics

Genomics and Phylogenetic Studies(25), Gut microbiota and health(17), Insect symbiosis and bacterial influences(10), Vector-borne infectious diseases(8), vaccines and immunoinformatics approaches(7)

Publications91 total

Author Correction: Complex genetic variation in nearly complete human genomes
Nature·2025· 1 citedOpen Access
Complex genetic variation in nearly complete human genomes
Nature·2025· 43 citedOpen Access
Novel therapy of Pseudomonas aeruginosa in the stallion: A case report
Journal of Equine Veterinary Science·2025Open Access
Complex genetic variation in nearly complete human genomes
2024· 26 citedOpen Access
The Association Between Canadian Wildfire Smoke Infiltration and Statewide Cardiopulmonary Clinical Encounters in Maryland
2024
The Hypervariable Tpr Multigene Family of Theileria Parasites, Defined by a Conserved, Membrane-Associated, C-Terminal Domain, Includes Several Copies with Defined Orthology Between Species
Journal of Molecular Evolution·2023· 1 citedOpen Access
Parasite control practices on UK stud farms: A client‐based survey
Equine Veterinary Journal·2023· 1 citedOpen Access
The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain
Nucleic Acids Research·2022· 69 citedOpen Access
Contextual in situ help for visual data interfaces
Information Visualization·2022· 8 cited
The Neuroscience Multi-Omic Archive: A BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain
2022Open Access
Mutagenesis of human genomes by endogenous mobile elements on a population scale
Genome Research·2021· 22 citedOpen Access
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Nature·2021· 353 citedOpen Access
Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz
F1000Research·2021· 1 citedOpen Access
Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity
PLoS neglected tropical diseases·2020· 6 citedOpen Access
HMPDACC: a Human Microbiome Project Multi-omic data resource
Nucleic Acids Research·2020· 32 citedOpen Access
Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz
F1000Research·2020· 2 citedOpen Access
Capture-based enrichment of <i>Theileria parva</i> DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity
2020· 2 citedOpen Access
An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
2020· 61 citedOpen Access
A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina
Nature Communications·2020· 187 citedOpen Access
Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential
Genome Medicine·2020· 80 citedOpen Access
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Frequent Co-authors

Owen White(21), Jennifer R. Wortman(18), Joshua Orvis(15), Claire M. Fraser(14), Samuel V. Angiuoli(12), Brian J. Haas(12), Anup Mahurkar(9), Michelle Giglio(9), Heather H. Creasy(8), Steven L. Salzberg(6), Joana C. Silva(6), Victor Felix(6), Jaideep P. Sundaram(5), Ramana Madupu(5), Tamara V. Feldblyum(5), Carrie McCracken(5), Vishvanath Nene(5), Paolo Amedeo(5), Jacques Ravel(5), Jonathan H. Badger(5)