James O. McInerney

University of Liverpool — United Kingdom

Biochemistry, Genetics and Molecular Biology · Life Sciences

49h-index9.4kcitations208works2.82yr avg
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Research Topics

Genomics and Phylogenetic Studies(84), Microbial Community Ecology and Physiology(33), Protist diversity and phylogeny(28), RNA and protein synthesis mechanisms(27), Evolution and Genetic Dynamics(22)

Publications204 total

Genomic Perplexity and the Evolution of Context-Dependent Function
Molecular Biology and Evolution·2026Open Access
PanForest: predicting genes in genomes using random forests
Bioinformatics·2026Open Access
Dissecting Phylogenetic Support: Unified Decay Indices, AU Tests, and Branch-Site Specific Visualizations
2025Open Access
Classifying Convergences in the Light of Horizontal Gene Transfer: Epaktovars and Xenotypes
Molecular Biology and Evolution·2025Open Access
Genomic constraints shape the evolution of alternative routes to drug resistance in prokaryotes
2025Open Access
Mammal placental phenotypes are predictable from microRNA repertoires
2025· 1 citedOpen Access
Optimization of Epsilon-Greedy Exploration
arXiv (Cornell University)·2025Open Access
Face the Pain: Radiobiological and Clinical Considerations of Re-radiosurgery to the Trigeminal Nerve Following Irradiation of an Abutting Petroclival Meningioma
Cureus·2025Open Access
Reconstructing the last common ancestor of all eukaryotes
PLoS Biology·2024· 38 citedOpen Access
Adjusting regression models for conditional uncertainty calibration
Machine Learning·2024Open Access
Novel mechanical response of parallelogram-face origami governed by topological characteristics
arXiv (Cornell University)·2024Open Access
Adjusting Regression Models for Conditional Uncertainty Calibration
arXiv (Cornell University)·2024Open Access
Variation Due to Regularization Tractably Recovers Bayesian Deep Learning
arXiv (Cornell University)·2024Open Access
Switching the Loss Reduces the Cost in Batch (Offline) Reinforcement Learning
arXiv (Cornell University)·2024Open Access
Contingency, repeatability, and predictability in the evolution of a prokaryotic pangenome
Proceedings of the National Academy of Sciences·2023· 37 citedOpen Access
Third Stereotactic Radiosurgery for Residual Arteriovenous Malformations: A Retrospective Multicenter Study
Neurosurgery·2023· 2 cited
Bursts of novel composite gene families at major nodes in animal evolution
2023· 6 citedOpen Access
Fungal phylogeny reconstructed using heterogeneous models reveals new placement of Microsporidia
2023Open Access
Contingency, Repeatability and Predictability in the Evolution of a Prokaryotic Pangenome
2023· 2 citedOpen Access
Rigidity percolation in a random tensegrity via analytic graph theory
arXiv (Cornell University)·2022Open Access
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Frequent Co-authors

Davide Pisani(7), Christopher J. Creevey(7), Mary J. O’Connell(6), James A. Cotton(5), Éric Bapteste(5), William Martin(4), Shijulal Nelson‐Sathi(3), Giddy Landan(3), Mark Wilkinson(3), T. Martin Embley(3), David A. Fitzpatrick(3), Fiona Whelan(3), Philippe Lopez(3), Claire C. Morgan(2), Aoife Doherty(2), Alan McNally(2), Laurent Charlin(2), David M. Blei(2), Mayo Roettger(2), Filipa L. Sousa(2)