Emmanuel Boutet

SIB Swiss Institute of Bioinformatics — Switzerland

Biochemistry, Genetics and Molecular Biology · Life Sciences

20h-index27.7kcitations31works366.32yr avg
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Research Topics

Biomedical Text Mining and Ontologies(12), Bioinformatics and Genomic Networks(11), Genomics and Phylogenetic Studies(8), Advanced Proteomics Techniques and Applications(6), Scientific Computing and Data Management(5)

Publications27 total

The UniProt website API: facilitating programmatic access to protein knowledge
Nucleic Acids Research·2025· 65 citedOpen Access
UniProt: the Universal Protein Knowledgebase in 2025
Nucleic Acids Research·2024· 1.4k citedOpen Access
Perspectives on tracking data reuse across biodata resources
Bioinformatics Advances·2024· 2 citedOpen Access
MBDBMetrics: an online metrics tool to measure the impact of biological data resources
Bioinformatics Advances·2023· 1 citedOpen Access
Annotation of biologically relevant ligands in UniProtKB using ChEBI
Bioinformatics·2022· 295 citedOpen Access
UniProt: the Universal Protein Knowledgebase in 2023
Nucleic Acids Research·2022· 6.5k citedOpen Access
SwissBioPics—an interactive library of cell images for the visualization of subcellular location data
Database·2022· 14 citedOpen Access
Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB
Metabolites·2021· 3 citedOpen Access
UniProt: the universal protein knowledgebase in 2021
Nucleic Acids Research·2020· 6.8k citedOpen Access
UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase
Bioinformatics·2020· 71 citedOpen Access
SwissBioPics – an interactive library of cell images for the visualization of subcellular location data
Faculty of 1000 Research Ltd·2020· 2 citedOpen Access
FAIR adoption, assessment and challenges at UniProt
Scientific Data·2019· 20 citedOpen Access
Diverse taxonomies for diverse chemistries: enhanced plant and fungal metabolic pathway annotation for natural product biosynthesis in UniProtKB/Swiss-Prot
Faculty of 1000 Research Ltd·2019Open Access
On expert curation and scalability: UniProtKB/Swiss-Prot as a case study
Bioinformatics·2017· 137 citedOpen Access
eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality
Database·2017· 8 citedOpen Access
On expert curation and sustainability: UniProtKB/Swiss-Prot as a case study
2016· 7 citedOpen Access
Scheme of a cytomegalovirus (CMV)
Acervo Digital da Universidade Estadual Paulista (Universidade Estadual Paulista)·2016Open Access
UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View
Methods in molecular biology·2015· 806 cited
Functional and Evolutionary Analysis of the CASPARIAN STRIP MEMBRANE DOMAIN PROTEIN Family    
PLANT PHYSIOLOGY·2014· 106 citedOpen Access
The UniProt-GO Annotation database in 2011
Nucleic Acids Research·2011· 443 citedOpen Access
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Frequent Co-authors

Damien Lieberherr(21), Alan Bridge(19), Sylvain Poux(18), Elisabeth Coudert(17), Marc Feuermann(17), Ivo Pedruzzi(17), Nicole Redaschi(16), Jerven Bolleman(16), Andrea H Auchincloss(15), Philippe Le Mercier(15), María Martin(14), Michele Magrane(14), Kristian B. Axelsen(14), Parit Bansal(14), Lionel Breuza(14), Anne Estreicher(14), Catherine Rivoire(14), Alex Bateman(13), Sébastien Géhant(13), Chantal Hulo(13)