Tong Si

Chinese Academy of Sciences — China

Biochemistry, Genetics and Molecular Biology · Life Sciences

27h-index3.2kcitations83works2.12yr avg
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Research Topics

CRISPR and Genetic Engineering(22), Microbial Metabolic Engineering and Bioproduction(21), Fungal and yeast genetics research(14), RNA and protein synthesis mechanisms(14), Microbial Natural Products and Biosynthesis(9)

Publications82 total

Decoding Prokaryotic Whole Genomes with a Product-Contextualized Large Language Model
2025Open Access
Exploring functional insights into the human gut microbiome via the structural proteome
Cell Host & Microbe·2025
Production of Archaeal Inositol Phospholipids in Engineered Saccharomyces cerevisiae
2025Open Access
Large language model agents as experimental orchestrators in data-driven enzyme engineering
Current Opinion in Biotechnology·2025
Democratizing protein language model training, sharing and collaboration
Nature Biotechnology·2025· 1 cited
Autonomous Liquid-handling Robotics Scripting for Accessible and Responsible Protein Engineering
2025Open Access
Research progress in the separation and purification of low-molecular-weight sugars and polyols
Separation and Purification Technology·2025
Mass Spectrometric Screening for Improving Enzymatic Conversion of Formaldehyde into C2 and C3 Products
ACS Synthetic Biology·2025· 1 cited
DNA-programmed responsive microorganism assembly with controlled patterns and behaviors
Science Advances·2025· 3 citedOpen Access
Machine learning approaches for assessing medication transfer to human breast milk
Journal of Pharmacokinetics and Pharmacodynamics·2025
Development of a cell-based assay coupled HPLC micro-fractionation technology for identification of anticancer natural products from plants
Journal of Chromatography A·2025
Systematic characterization of plant-associated bacteria that can degrade indole-3-acetic acid
PLoS Biology·2024· 17 citedOpen Access
Critical Assessment of Protein Engineering (CAPE): A Student Challenge on the Cloud
ACS Synthetic Biology·2024· 7 citedOpen Access
Degradation of indole-3-acetic acid by plant-associated microbes
2024· 1 citedOpen Access
A New Ergosterol-Type Steroid Isolated from the Nicotiana tabacum-Derived Endophytic Fungus Aspergillus sp. TE-65L
Records of Natural Products·2023Open Access
A novel f-divergence based generative adversarial imputation method for scRNA-seq data analysis
PLoS ONE·2023· 5 citedOpen Access
A novel <i>f</i> -divergence based generative adversarial imputation method for scRNA-seq data analysis
2023· 4 citedOpen Access
Atomic-level analysis of migration and transformation of organic sodium in high-alkali coal pyrolysis using reactive molecular dynamics simulations
Journal of environmental chemical engineering·2023· 9 cited
Deep Mutational Scanning of an Oxygen-Independent Fluorescent Protein CreiLOV for Comprehensive Profiling of Mutational and Epistatic Effects
ACS Synthetic Biology·2023· 23 citedOpen Access
RhlA Exhibits Dual Thioesterase and Acyltransferase Activities during Rhamnolipid Biosynthesis
ACS Catalysis·2023· 9 cited
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Frequent Co-authors

Huimin Zhao(23), Lihao Fu(9), Yongcan Chen(7), Jonathan V. Sweedler(6), Jianzhi Zhang(6), Erpeng Guo(6), Yuhao Min(4), Zhilai Hong(4), Han Xiao(3), Jiazhang Lian(3), Ran Chao(3), Bin Li(3), Bo Wang(3), Linzixuan Zhang(3), Songya Zhang(3), Wenhao Xie(3), Lei Dai(3), Zhenkun Zhang(3), Zehua Bao(2), Jing Liang(2)