Nuria Plattner

Freie Universität Berlin — Germany

Physics and Astronomy · Physical Sciences

14h-index2.6kcitations33works0.02yr avg
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Research Topics

Advanced Chemical Physics Studies(7), Protein Structure and Dynamics(7), Spectroscopy and Quantum Chemical Studies(7), Stochastic processes and statistical mechanics(5), Markov Chains and Monte Carlo Methods(5)

Publications33 total

Molecular dynamics dataset of Trypsin-Benzamidine
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Molecular dynamics dataset of Trypsin-Benzamidine
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Molecular dynamics dataset of barnase-barstar
2023Open Access
Molecular dynamics dataset of barnase-barstar
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Molecular dynamics dataset of Synaptotagmin-1
2022· 1 citedOpen Access
Molecular dynamics dataset of Synaptotagmin-1
Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
Coupling of Conformational Switches in Calcium Sensor Unraveled with Local Markov Models and Transfer Entropy
Journal of Chemical Theory and Computation·2020· 13 cited
Coupling of conformational switches in calcium sensor unraveled with local Markov models and transfer entropy
2020Open Access
Complete protein–protein association kinetics in atomic detail revealed by molecular dynamics simulations and Markov modelling
Nature Chemistry·2017· 369 cited
Exploring the properties of valence electron based potential functions\n for the nonbonded interactions in atomistic force fields
arXiv (Cornell University)·2016Open Access
Exploring the properties of valence electron based potential functions for the nonbonded interactions in atomistic force fields
arXiv (Cornell University)·2016Open Access
PyEMMA 2: A Software Package for Estimation, Validation, and Analysis of Markov Models
Journal of Chemical Theory and Computation·2015· 1.3k cited
Crystal structure of the dynamin tetramer
Nature·2015· 135 cited
Protein conformational plasticity and complex ligand-binding kinetics explored by atomistic simulations and Markov models
Nature Communications·2015· 431 citedOpen Access
Spatial Averaging: Sampling Enhancement for Exploring Configurational Space of Atomic Clusters and Biomolecules
Journal of Chemical Theory and Computation·2014· 1 cited
The effect of classical and quantum dynamics on vibrational frequency shifts of H2 in clathrate hydrates
The Journal of Chemical Physics·2014· 11 citedOpen Access
Overcoming the Rare Event Sampling Problem in Biological Systems with Infinite Swapping
Journal of Chemical Theory and Computation·2013· 21 cited
Rare-event sampling: Occupation-based performance measures for parallel tempering and infinite swapping Monte Carlo methods
The Journal of Chemical Physics·2012· 20 citedOpen Access
On the Infinite Swapping Limit for Parallel Tempering
Multiscale Modeling and Simulation·2012· 58 cited
Quantifying the Importance of Protein Conformation on Ligand Migration in Myoglobin
Biophysical Journal·2012· 23 citedOpen Access
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Frequent Co-authors

Markus Meuwly(13), Frank Noé(12), J. D. Doll(10), Gianni De Fabritiis(5), Paul Dupuis(5), Yufei Liu(4), Tim Hempel(4), Stefan Doerr(3), David L. Freeman(3), J. E. Gubernatis(2), Myung Won Lee(2), Ignasi Buch(2), Toni Giorgino(2), Martin K. Scherer(1), Benjamin Trendelkamp-Schroer(1), Fabian Paul(1), Guillermo Pérez‐Hernández(1), Moritz Hoffmann(1), Christoph Wehmeyer(1), Jan-Hendrik Prinz(1)