Anna Martinez Casals

Harvard University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

7h-index216citations25works7.32yr avg
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Research Topics

Single-cell and spatial transcriptomics(8), Cell Image Analysis Techniques(7), AI in cancer detection(5), Neonatal Respiratory Health Research(4), Congenital Diaphragmatic Hernia Studies(3)

Publications25 total

Latent plasticity of the human pancreas across development, health, and disease
2025· 1 citedOpen Access
Intrinsic heterogeneity of primary cilia revealed through spatial proteomics
Cell·2025· 12 citedOpen Access
Flexible and robust cell-type annotation for highly multiplexed tissue images
Cell Systems·2025Open Access
Streamlining Multiplexed Tissue Image Analysis with PIPΣX: An Integrated Automated Pipeline for Image Processing and EXploration for Diverse Tissue Types
2025· 2 citedOpen Access
Multiplexed Deep Visual Proteomics Unveils Spatial Heterogeneity and Rare Endocrine States in Human Adult Pancreatic Islets
2025· 4 citedOpen Access
Dataset: Multiplexed Deep Visual Proteomics Unveils Spatial Heterogeneity and Rare Endocrine States in Human Adult Pancreatic Islets
2025
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage
Nature Methods·2025· 18 citedOpen Access
High-parametric protein maps reveal the spatial organization in early-developing human lung
Nature Communications·2024· 6 citedOpen Access
Intrinsic Heterogeneity of Primary Cilia Revealed Through Spatial Proteomics
2024· 15 citedOpen Access
Flexible and robust cell type annotation for highly multiplexed tissue images
2024Open Access
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images
Nature Methods·2024· 29 citedOpen Access
High-parametric protein maps reveal the spatial organization in early-developing human lung
2024· 1 citedOpen Access
Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging
Nature Methods·2023· 43 citedOpen Access
Dataset: CODEX highly multiplexed tissue imaging in pancreas
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Dataset: CODEX highly multiplexed tissue imaging in pancreas
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Indirect immunofluorescence - tissue staining in TMA and whole tissue FFPE sections v1
2023· 3 citedOpen Access
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung
Nature Cell Biology·2023· 62 citedOpen Access
CODEX ® Multiplexed Imaging – tissue staining in TMA and whole tissue FFPE sections v1
2022· 1 citedOpen Access
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images
2022· 11 citedOpen Access
Developmental origins of cell heterogeneity in the human lung
2022· 5 citedOpen Access
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Frequent Co-authors

Emma Lundberg(18), Mats Nilsson(6), Frida Björklund(6), Frederic Ballllosera Navarro(6), Cecilia Lindskog(6), Mariya Mardamshina(6), Alexandros Sountoulidis(4), Paulo Czarnewski(4), Žaneta Andrusivová(4), Xiaofei Li(4), Sanem Sarıyar(4), Erik Sundström(4), Sten Linnarsson(4), Joakim Lundeberg(4), Christos Samakovlis(4), Jan N. Hansen(4), Huangqingbo Sun(4), Anna Bäckström(4), Patrick E. MacDonald(4), Sergio Marco Salas(3)