Lila Kari

University of Waterloo — Canada

Biochemistry, Genetics and Molecular Biology · Life Sciences

32h-index4.6kcitations298works1.32yr avg
OpenAlex↗ORCID↗Google Scholar↗Lab page↗

Accepting Students?

No reports yet. Know if this professor is taking students?

Research Topics

DNA and Biological Computing(174), semigroups and automata theory(112), Advanced biosensing and bioanalysis techniques(71), Algorithms and Data Compression(66), Modular Robots and Swarm Intelligence(46)

Publications298 total

Life at the extremes: maximally divergent microbes with similar genomic signatures linked to extreme environments
NAR Genomics and Bioinformatics·2025Open Access
Bridging Chaos Game Representations and $k$-mer Frequencies of DNA Sequences
arXiv (Cornell University)·2025· 2 citedOpen Access
Genome-wide Pervasiveness and Localized Variation of <i>k</i> -mer-based Genomic Signatures in Eukaryotes
2025· 1 citedOpen Access
Life at the extremes: Maximally divergent microbes with similar genomic signatures linked to extreme environments
2025Open Access
CLIBD:Bridging Vision and Genomics for Biodiversity Monitoring at Scale
VBN Forskningsportal (Aalborg Universitet)·2025Open Access
Enhancing DNA Foundation Models to Address Masking Inefficiencies
arXiv (Cornell University)·2025Open Access
CGRclust: Chaos Game Representation for twin contrastive clustering of unlabelled DNA sequences
BMC Genomics·2024· 5 citedOpen Access
CGRclust: Chaos Game Representation for Twin Contrastive Clustering of Unlabelled DNA Sequences
arXiv (Cornell University)·2024Open Access
BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity
arXiv (Cornell University)·2024· 2 citedOpen Access
Extreme environments are coded into the genomes of the organisms that live there
2024
Leveraging machine learning for taxonomic classification of emerging astroviruses
Frontiers in Molecular Biosciences·2024· 5 citedOpen Access
BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity
2024
BarcodeBERT: Transformers for Biodiversity Analysis
arXiv (Cornell University)·2023· 1 citedOpen Access
Environment and taxonomy shape the genomic signature of prokaryotic extremophiles
Scientific Reports·2023· 17 citedOpen Access
MT-MAG: Accurate and interpretable machine learning for complete or partial taxonomic assignments of metagenome-assembled genomes
PLoS ONE·2023· 7 citedOpen Access
<i>i</i>DeLUCS: a deep learning interactive tool for alignment-free clustering of DNA sequences
Bioinformatics·2023· 12 citedOpen Access
Environment and taxonomy shape the genomic signature of prokaryotic extremophiles
2023· 1 citedOpen Access
iDeLUCS: A deep learning interactive tool for alignment-free clustering of DNA sequences
2023Open Access
Mutational Patterns Observed in SARS-CoV-2 Genomes Sampled From Successive Epochs Delimited by Major Public Health Events in Ontario, Canada: Genomic Surveillance Study
JMIR Bioinformatics and Biotechnology·2022Open Access
Editorial
Theoretical Computer Science·2022
page 1 of 15Next →

Frequent Co-authors

Stavros Konstantinidis(10), G. Thierrin(8), Kathleen A. Hill(7), Petr Sosı́k(7), Gheorghe Pǎun(6), Gurjit S. Randhawa(4), Laura F. Landweber(4), Arto Salomaa(4), Sheng Yü(4), Grzegorz Rozenberg(3), Kalpana Mahalingam(3), Elena Losseva(3), Jarkko Kari(3), Rallis Karamichalis(3), Mark Daley(3), Maximillian P. M. Soltysiak(2), Hadi El Roz(2), Camila P. E. de Souza(2), Stephen Solis-Reyes(2), Erzsébet Csuhaj-Varjú(2)