Dénes Berta

Budapest University of Technology and Economics — Hungary

Biochemistry, Genetics and Molecular Biology · Life Sciences

15h-index649citations49works0.92yr avg
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Research Topics

Protein Structure and Dynamics(8), SARS-CoV-2 and COVID-19 Research(6), Computational Drug Discovery Methods(6), Protein Kinase Regulation and GTPase Signaling(5), Crystallization and Solubility Studies(5)

Publications49 total

Systematically Improvable and Locality Accelerated Enzymatic Reactivity Modeling: Toward Chemical Accuracy at Affordable Cost
2026Open Access
Accurate Density Functional Theory for Non-Covalent Interactions in Charged Systems
2025
Accurate Density Functional Theory for Non-Covalent Interactions in Charged Systems
2025
Hybrid DFT Quality Thermochemistry and Environment Effects at GGA Cost via Local Quantum Embedding
Journal of Chemical Theory and Computation·2025Open Access
Hybrid DFT quality thermochemistry and environment effects at GGA cost via local quantum embedding
2025
CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13
Journal of Chemical Information and Modeling·2025· 8 citedOpen Access
Nature counts to three: Universal Mg-pinch motif polarizes the cleaved bond in NTP-processing enzymes
2025
Accurate Density Functional Theory for Non-Covalent Interactions in Charged Systems
2025Open Access
CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13
2025Open Access
CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13
2025· 2 citedOpen Access
CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13
2025· 1 citedOpen Access
On identifying dynamic length scales in crystal plasticity
arXiv (Cornell University)·2024Open Access
What a twist: structural biology of the SARS-CoV-2 helicase nsp13
Crystallography Reviews·2023· 2 cited
Mechanism-Based Redesign of GAP to Activate Oncogenic Ras
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Mechanism-Based Redesign of GAP to Activate Oncogenic Ras
Journal of the American Chemical Society·2023· 16 citedOpen Access
Mechanism-Based Redesign of GAP to Activate Oncogenic Ras
2023Open Access
Redesigned GAP to activate oncogenic GAP
2023· 1 citedOpen Access
The proton transfer mechanism of the Ras GTPases, the effect of the GTPase activating protein, and oncogenic mutations
Biophysical Journal·2023Open Access
Dynamic regulation of RAS and RAS signaling
Biochemical Journal·2023· 78 citedOpen Access
Key Oncogenic Ras Mutations Impair Limiting Proton Transfer Rates
2022Open Access
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Frequent Co-authors

Edina Rosta(22), Tamás Földes(8), Imre Pápai(8), Sam Martino(7), Magd Badaoui(6), Pedro J. Buigues(6), Sascha Gehrke(6), Geoffrey Wells(6), Konstantin Chernichenko(5), Martin Nieger(5), Timo Repo(5), Ádám Madarász(5), Beáta G. Vértessy(5), Péter R. Nagy(5), Kinga Nyíri(4), Oleksandra Herasymenko(4), Madhushika Silva(4), Abd Al‐Aziz A. Abu‐Saleh(4), Jesus Antonio Alvarado-Huayhuaz(4), Oscar E. A. Arce(4)