Antonina Hafner

Stanford University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

12h-index2.5kcitations36works2.82yr avg
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Research Topics

Genomics and Chromatin Dynamics(16), Cancer-related Molecular Pathways(13), RNA Research and Splicing(12), Single-cell and spatial transcriptomics(9), Epigenetics and DNA Methylation(7)

Publications36 total

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data
UNC Libraries·2025Open Access
FAIR sharing of Chromatin Tracing datasets using the newly developed 4DN FISH Omics Format.
PubMed·2025
Epiregulon: Single-cell transcription factor activity inference to predict drug response and drivers of cell states
Nature Communications·2025Open Access
Super-enhancer interactomes from single cells link clustering and transcription
2024· 12 citedOpen Access
Single-Cell Chromatin State Transitions During Epigenetic Memory Formation
SSRN Electronic Journal·2024· 2 citedOpen Access
Epiregulon: Inference of single-cell transcription factor activity to predict drug response and drivers of cell state
2023· 4 citedOpen Access
Single-cell chromatin state transitions during epigenetic memory formation
2023· 7 citedOpen Access
SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data
Nature Communications·2023· 10 citedOpen Access
Loop stacking organizes genome folding from TADs to chromosomes
Molecular Cell·2023· 116 citedOpen Access
SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data
2022Open Access
The spatial organization of transcriptional control
Nature Reviews Genetics·2022· 152 cited
Loop stacking organizes genome folding from TADs to chromosomes
2022· 15 citedOpen Access
A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation
Nature Communications·2022· 17 citedOpen Access
How subtle changes in 3D structure can create large changes in transcription
eLife·2021· 156 citedOpen Access
mSWI/SNF promotes Polycomb repression both directly and through genome-wide redistribution
Nature Structural & Molecular Biology·2021· 84 citedOpen Access
Author response: How subtle changes in 3D structure can create large changes in transcription
2021Open Access
How subtle changes in 3D structure can create large changes in transcription
2020· 11 citedOpen Access
Quantifying the Central Dogma in the p53 Pathway in Live Single Cells
Cell Systems·2020· 38 citedOpen Access
Identification of universal and cell-type specific p53 DNA binding
BMC Molecular and Cell Biology·2020· 23 citedOpen Access
mSWI/SNF promotes polycomb repression both directly and through genome-wide redistribution
2020· 8 citedOpen Access
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Frequent Co-authors

Alistair N. Boettiger(19), Galit Lahav(13), Jacob Stewart-Ornstein(10), Michael Tsabar(8), Lyubov Kublo(8), Ashwini Jambhekar(4), Sedona E. Murphy(4), Bojing Blair Jia(4), Adam Jussila(4), Caterina Strambio‐De‐Castillia(4), Bing Ren(4), Martha L. Bulyk(3), Leslie J. Mateo(3), Isaac S. Cinquini(3), Carly A. Walker(3), Jordan Yupeng Xiao(3), Derek J. Le(3), Lindsay Lee(3), Hongyu Yu(3), Chenxu Zhu(3)